Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq631 149 3e-33 seq224 149 3e-33 seq755 143 1e-31 seq4886 104 1e-19 seq4883 104 1e-19 seq4887 98.7 4e-18 seq1008 80.6 1e-12 >seq631 Length=56943 Score = 149 bits (164), Expect = 3e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| Sbjct 40999 TGGGACCCGAAAGATGGTGAACTATGTCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTG 41058 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| |||| | ||||||||||||||| Sbjct 41059 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTACGACCTGGGTATAGGGGCGA 41115 >seq224 Length=268179 Score = 149 bits (164), Expect = 3e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| | |||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 93765 TGGTAACCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTG 93706 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 93705 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCTGACCTGGGTATAGGGGCGA 93649 Score = 134 bits (148), Expect = 6e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||| |||| ||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 100978 TGGTACCGGAAATATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTG 101037 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| | ||| | |||||||||| |||| Sbjct 101038 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTTGTCCGACCTGGGTATAGGAGCGA 101094 >seq755 Length=203271 Score = 143 bits (158), Expect = 1e-31 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||| |||||||||||||||||||| |||| || ||||||||||||||||||| Sbjct 154813 TGGTACCCGCAAGATGGTGAACTATGCCTGGGCAGGGCGACGCCAGAGGAAACTCTGGTG 154754 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 154753 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACGTGGGTATAGGGGCGA 154697 >seq4886 Length=30003503 Score = 104 bits (114), Expect = 1e-19 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | || || ||||||| Sbjct 5918151 GAGTCGTGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAAT 5918210 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 5918211 ACCGTCACGAGACCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTG 5918267 >seq4883 Length=37168685 Score = 104 bits (114), Expect = 1e-19 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | || || ||||||| Sbjct 35200072 GAGTCGGGTTGCTTGGGAATGCAGCCCAAATCGGGTGGTAAAGTCCATCGAAGGCTAAAT 35200131 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | | | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 35200132 ACCGTCACGAGACCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTG 35200188 Score = 82.4 bits (90), Expect = 3e-13 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||||| ||| ||| |||||||||||||| ||| Sbjct 7872920 TGGTACCCGAAAGATGGTGAACTATGCCTATGCAGGC-GAACCCAGAGGAAACTCTAGTG 7872862 Query 627 GAGGCTCGCAGCGGTTCTGG 646 ||||| | |||||| |||| Sbjct 7872861 GAGGCCTGTAGCGGTCCTGG 7872842 >seq4887 Length=33568646 Score = 98.7 bits (108), Expect = 4e-18 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| | |||| ||||||||||||| | || ||| |||||| | || || ||||||| Sbjct 12789589 GAGTTGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCAATCCAAGGCTAAAT 12789530 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | ||||||||||| | ||||||| | | ||||| ||||||| |||||| | Sbjct 12789529 ACCTTCACGAGACCGATAGAGGACAAGTACCGGTAGGGAAAGTTGAAAAGAACTTTGAAG 12789470 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||| | ||| || Sbjct 12789469 AGAGAGTTCAACAGGGCGTGAAACCGTTAAGAGGTAA 12789433 >seq1008 Length=98123 Score = 80.6 bits (88), Expect = 1e-12 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 ||||||||||||||||||||||| |||| ||| ||||| |||||| | |||||||| Sbjct 94731 CCGAAAGATGGTGAACTATGCCTATGCAGGGCGAACCCAGAAGAAACTGTAGTGGAGGCC 94790 Query 633 CGCAGCGGTTCTGG 646 |||||||| |||| Sbjct 94791 TGCAGCGGTCCTGG 94804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079895152400