Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq755 161 2e-37 seq4867 147 3e-33 >seq755 Length=203271 Score = 161 bits (178), Expect = 2e-37 Identities = 184/244 (75%), Gaps = 15/244 (6%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| |||||||||| |||| | ||||| |||||||||||||||| || Sbjct 156609 CATTGTGGCGCGCGTGCAGCCCCGGACATC----------ACAGACCTGTTATTGC-TCC 156657 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGA 136 | || | |||||| | |||| | ||||||||||||| | | || ||| || Sbjct 156658 ATCT-CGTGTGGCTGAACGCCACTTCTCCCTCTAAGAAGTTGGACGCCGACCGCTCGGGA 156716 Query 137 TGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | | ||| |||||| | ||||| |||||||||||||| ||||||||||||| | Sbjct 156717 CGCGTAACTAGTTAGCATGCCGGAGTCTCATTCGTTATCGGAATGAACCAGACAAATCGC 156776 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||||| ||||||||||| |||||| | ||| ||||||||||||||||| Sbjct 156777 TCCACCAACTAAGAACAGCCATGCACCATCACCCACATAAT-GAGAAAGAGCTATCAATC 156835 Query 255 TGTC 258 |||| Sbjct 156836 TGTC 156839 Score = 149 bits (164), Expect = 1e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| Sbjct 161660 GTATCGTTCGTTATCGGAATGAACCAGAAAAATCGCTCCACCAACTAAGAACGGCCATGC 161719 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||| |||||| ||||||||||||||||||||| Sbjct 161720 ACAACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 161759 >seq4867 Length=22528368 Score = 147 bits (162), Expect = 3e-33 Identities = 168/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || ||| ||| || ||| | || | || ||||| |||||||||||||||||||||| || Sbjct 17267161 CATTGTGGCGAGCATGCAGGCCCGGAC-TCTAACGGCATCACAGACCTGTTATTGC-TCC 17267218 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA---GT 133 | || | | |||| | |||| | |||||||||||||| | || ||| | Sbjct 17267219 ATCTCGCGT-GGCTCAACGCCACTTGTCCCTCTAAGAAGGTGGATGCCGACCGCTCGGGG 17267277 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | ||| |||||| | ||||||||| |||||||||| ||||||||||||| Sbjct 17267278 CCACGTAACTAGTTAGCATGCCGGAGTCTCGTTCATTATCGGAATGAACCAGACAAATCG 17267337 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 17267338 CTCCACCAACTAAGAACGGCAATGCACCACCACCCACAGAA 17267378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796762269528