Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4887 318 1e-84 seq4881 201 2e-49 seq95 114 2e-23 >seq4887 Length=33568646 Score = 318 bits (352), Expect = 1e-84 Identities = 211/233 (91%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGAC--GGTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | |||| |||| |||| || ||||||||||||||||||||||||||| Sbjct 12788291 TACTGAGCAGGGTTACTATTGCAACGACACGGACATCAGTAGGGTAAAACTAACCTGTCT 12788350 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 12788351 CACGACGGTCTACACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGT 12788410 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 12788411 GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 12788470 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCAC 231 ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 12788471 ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACAC 12788523 >seq4881 Length=7414910 Score = 201 bits (222), Expect = 2e-49 Identities = 146/168 (87%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGAC--GGTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| |||| |||| || ||||||||||||||||||||||||||| Sbjct 1548888 TACTGAGCAGGATTACTATTGCAACGACACGGACATCAGTAGGGTAAAACTAACCTGTCT 1548829 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1548828 CACGACGGCCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGATTAGT 1548769 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||||||||| |||| | ||||| |||||||||||||||||||| Sbjct 1548768 AAATTCTGCTTCATAATGAAATGAAGATCCGACATCGAAGGATCAAAA 1548721 >seq95 Length=1223695 Score = 114 bits (126), Expect = 2e-23 Identities = 120/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 |||||| || ||| |||||||||||||| ||||||||||| ||||| ||||| ||| Sbjct 1219751 CTAAACACATATCATGTTCCCTATTAGTGAATGAACAATCCAGCGCTTGGTGAATTTTGC 1219810 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 | | | ||||||||||||| | || || |||||| ||| | ||| ||||| | ||| Sbjct 1219811 TCCATAACGATAGGAAGAGCCAGCTTCAAAAGATCAATAAGTGAAGTCACTATGGATGCT 1219870 Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 | |||| ||||||| || ||||| || ||| |||| Sbjct 1219871 TAGCTGTCACAAGCTAG---TCCCTATGCTAAATTTT 1219904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854358236928