Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4877 206 8e-51 seq4884 86.0 2e-14 >seq4877 Length=21177232 Score = 206 bits (228), Expect = 8e-51 Identities = 363/525 (69%), Gaps = 78/525 (15%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||| |||| | || | ||||| ||||||| ||||| |||||| |||||| Sbjct 16154744 CTCATTCCAAGTACAGGGCCTCGCAAGAGACCTGTATTGTTATTTTTTGTCAATACCTCT 16154803 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 |||| || | ||||| |||||||||||| |||||||||||| |||||| ||||||||| Sbjct 16154804 --GTGTTGGAACTGGGTTATTTGCGCGCCTTCTGCCTTCCTTGCATGTGGGAGCCGTTTC 16154861 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||| ||| ||||||||||||||||||| ||||||||||| |||| | ||||||||||| Sbjct 16154862 TCAGTCTCACTCTCCGGAATCGAACCCTGATTCCCCGTTAGCCGTGGTCACCATGGTAGG 16154921 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 | || || ||||||||||||||| ||| |||||| | || | ||| Sbjct 16154922 -CGCT-----------GATAGTTGATAGGGCAGACATTCGAATGAGGGA--GCTTGATCA 16154967 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC-----GTT 297 ||| | | ||||| || |||| || | | || || || | Sbjct 16154968 --GCC----------TGAGGTTATCTAGAGTCACAAAAGTGTCCGGAGCCGCCCCGGATG 16155015 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCC-GA-------------AGTCGG-GGTTTTT 342 |||||| || | |||||| ||| | | || || ||||| | || Sbjct 16155016 GGTTTTGGATATCATAAATGCACTCGTCCCTGACCTAGGTTTGTCGTGTCGGCACTAGTT 16155075 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAAT 399 |||||||||||||||| ||||| |||||||| ||| || | | | |||||| Sbjct 16155076 AGCATGTATTAGCTCTGGAATT---GGAGTTATCCAAGTAGCGGTTA-GAGCGATCAAAG 16155131 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| |||||||||||||||||||||| ||| ||| | || Sbjct 16155132 GAACCATAACTGATTTAATGAGCCATT-----------TGT-----GTGC-----ATGAG 16155170 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||||||||||||||||||| |||||||| ||||||| || Sbjct 16155171 ATCTGCATGGCTTAATCTTTGAGACGAGCATATG-CTACTGGTAG 16155214 >seq4884 Length=26945264 Score = 86.0 bits (94), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACT-ATCAAATA 400 |||| |||||||||||||||| |||| |||||||| || | ||| | | |||||| Sbjct 14856039 GCATTTATTAGCTCTAGAATTGCCACAGTTATCCAAGT--TTGGGTGGAGTGATCAAAAG 14855982 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 ||| |||||||||||||||||||| || ||||||| Sbjct 14855981 AACCATAACTGATTTAATGAGCCAATCACAGTTTC 14855947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510326171648