Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leuciscus_20waleckii_20[genbank_20GCA_5F900092035.1_202016-06-28] 4,888 sequences; 752,538,629 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq4874 98.7 4e-15 seq4869 86.0 3e-11 >seq4874 Length=21776898 Score = 98.7 bits (108), Expect = 4e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || ||||| |||| ||| || | ||||| || | |||| ||| ||||| ||| Sbjct 12080981 GCGTTGATGATCTCTTTGATTCTCGGGACTCCCAGAGTGATGTTCATGGAAGCGACTCCG 12080922 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 || ||||||||||||| |||||||| ||| ||| |||||| ||||||| |||| Sbjct 12080921 GCGAAGTGGAAGGTCTTGAGGGTCATCTGAGTGCCGGGCTCCCCGATGCTCTGG 12080868 >seq4869 Length=19992947 Score = 86.0 bits (94), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 349094 CTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGG 349153 ||||| ||||| || || |||||| | | | |||||||||||||||||| | |||| Sbjct 17784765 CTGGGAATGCCGAGCGTGACGTTCATCTCGCCCCTGCCGGCAAAGTGGAAGGTGTTGAGG 17784706 Query 349154 GTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCG 349213 |||| ||| ||| |||||| ||||||| ||| |||| || | || ||| ||| ||| Sbjct 17784705 GTCATCTGTGTGGAGGGCTCCCCGATGCTCTGAGCCGCCAGCAGACCCACCGCCTCCCCG 17784646 Query 349214 GG 349215 || Sbjct 17784645 GG 17784644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084605453556624