Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq16395 104 1e-20 seq14878 104 1e-20 seq10554 104 1e-20 seq1039 95.1 7e-18 >seq16395 Length=3681 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 1416 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 1357 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 1356 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 1300 >seq14878 Length=5361 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 2045 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 1986 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 1985 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 1929 >seq10554 Length=21645 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 13105 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 13164 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 13165 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 13221 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| | || Sbjct 4389 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCACCG 4448 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| || |||||||||||||||||||||||| Sbjct 4449 GATCGCTAGTTGGCATCGTTTATGGTCGGAACGACGACGGTATCTGATCGTCTTCGA 4505 >seq1039 Length=155744 Score = 95.1 bits (104), Expect = 7e-18 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| | || Sbjct 6679 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCACCG 6738 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| || |||||||||||||||||||||||| Sbjct 6739 GATCGCTAGTTGGCATCGTTTATGGTCGGAACGACGACGGTATCTGATCGTCTTCGA 6795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278352503220