Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10554 172 1e-40 seq4076 172 1e-40 seq2685 172 1e-40 seq1039 168 1e-39 seq16395 161 2e-37 seq14878 161 2e-37 seq8973 102 1e-19 >seq10554 Length=21645 Score = 172 bits (190), Expect = 1e-40 Identities = 211/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 13507 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 13448 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 13447 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 13389 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 13388 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 13329 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 13328 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 13269 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 13268 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 13229 Score = 168 bits (186), Expect = 1e-39 Identities = 210/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 4791 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 4732 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 4731 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 4673 Query 156 TCTATTTTGTTGG-TTTCT---AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| || ||||| | || | | |||||||| ||||| | |||||| Sbjct 4672 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 4613 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 4612 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 4553 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| ||||||| |||||||| |||||||||| Sbjct 4552 GCATTTGCCAAGAATGTTTTTATTAATCA-AGAACGAAAGT 4513 >seq4076 Length=38546 Score = 172 bits (190), Expect = 1e-40 Identities = 211/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 36372 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 36313 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 36312 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 36254 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 36253 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 36194 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 36193 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 36134 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 36133 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 36094 >seq2685 Length=177281 Score = 172 bits (190), Expect = 1e-40 Identities = 211/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 167330 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 167389 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 167390 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 167448 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 167449 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 167508 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 167509 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACAAAAGCGAAA 167568 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 167569 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 167608 >seq1039 Length=155744 Score = 168 bits (186), Expect = 1e-39 Identities = 210/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 7081 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 7022 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 7021 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 6963 Query 156 TCTATTTTGTTGG-TTTCT---AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| || ||||| | || | | |||||||| ||||| | |||||| Sbjct 6962 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 6903 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 6902 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 6843 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| ||||||| |||||||| |||||||||| Sbjct 6842 GCATTTGCCAAGAATGTTTTTATTAATCA-AGAACGAAAGT 6803 >seq16395 Length=3681 Score = 161 bits (178), Expect = 2e-37 Identities = 209/281 (74%), Gaps = 11/281 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | ||||||||||||||||||| ||| Sbjct 1016 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAG--TGT 1073 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 1074 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 1132 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 1133 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 1192 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 1193 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 1252 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 1253 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1292 >seq14878 Length=5361 Score = 161 bits (178), Expect = 2e-37 Identities = 209/281 (74%), Gaps = 11/281 (4%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | ||||||||||||||||||| ||| Sbjct 1645 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAG--TGT 1702 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 1703 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 1761 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 1762 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 1821 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 1822 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 1881 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 1882 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1921 >seq8973 Length=17874 Score = 102 bits (112), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | ||||||||||||||||| ||||| Sbjct 17745 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATT--AGTGT 17802 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 17803 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 17861 Query 156 TCTATTTTGTTGG 168 |||||||||| || Sbjct 17862 TCTATTTTGTGGG 17874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915033451904