Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq7294 149 3e-33 seq2126 140 1e-30 seq6976 131 7e-28 seq1039 122 4e-25 seq16395 118 4e-24 >seq7294 Length=19851 Score = 149 bits (164), Expect = 3e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 3051 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 2992 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2991 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 2937 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 3857 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 3798 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 3797 ACCGGCACGAGACCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 3738 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 3737 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 3698 >seq2126 Length=113878 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 89682 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 89623 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| | ||||||||| || || || ||||||||||||||| Sbjct 89622 GGCCCGTAGCGGTCCTGACATGCAAATCGGTCATCCAACCTGGGTATAGGGGCGA 89568 >seq6976 Length=18777 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 15220 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 15279 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 15280 ACCGGCACGAGACCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 15339 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 15340 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 15379 Score = 96.9 bits (106), Expect = 1e-17 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| |||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 3882 GAGTCGGGTTCTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 3941 Query 100 ATTGG--CCAGAGA-CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 | | ||||||| ||||||| ||||||| | | ||||| ||||||| |||||| Sbjct 3942 ACCAGCACCAGAGACCCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTG 4001 Query 157 GAAAGAGAG 165 | |||||| Sbjct 4002 AAGAGAGAG 4010 >seq1039 Length=155744 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 3853 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 3794 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 3793 ACCGGCACGAGACCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 3734 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||| |||| ||| || || Sbjct 3733 AGAGAGTTCAAGAGGGTGTGAAACCATTGAGAGGTAAACG 3694 >seq16395 Length=3681 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 3420 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 3479 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| | |||| | Sbjct 3480 ACCGGCACGAGACCGATAGTCAACAAGTACCTTAAGGGAAAGTTGAAAAGAATTTTGAAG 3539 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || || |||| |||| ||| || || Sbjct 3540 AGAGAGTTCAAGAGGGCGCGAAACCATTGAGAGGTAAACG 3579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079609652900