Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq14878 131 8e-29 seq7294 131 8e-29 seq1039 131 8e-29 seq16395 116 2e-24 seq6976 114 6e-24 >seq14878 Length=5361 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 5088 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCA 5147 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| || ||| ||||| |||| |||||| ||| Sbjct 5148 CCGAATCCCCGTCCGACGGGCGGGCGTGGGAAATGTGGTGTA 5189 >seq7294 Length=19851 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 4075 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCA 4016 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| || ||| ||||| |||| |||||| ||| Sbjct 4015 CCGAATCCCCGTCCGACGGGCGGGCGTGGGAAATGTGGTGTA 3974 >seq1039 Length=155744 Score = 131 bits (144), Expect = 8e-29 Identities = 90/102 (88%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 4071 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCA 4012 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| || ||| ||||| |||| |||||| ||| Sbjct 4011 CCGAATCCCCGTCCGACGGGCGGGCGTGGGAAATGTGGTGTA 3970 >seq16395 Length=3681 Score = 116 bits (128), Expect = 2e-24 Identities = 84/97 (87%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 3205 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCA 3264 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 |||||||||| || | | ||||| |||| ||||| Sbjct 3265 CCGAATCCCCATCCGACAGGCGGGCGTGGGAAATGTG 3301 >seq6976 Length=18777 Score = 114 bits (126), Expect = 6e-24 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 3675 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCAAAGAGGGAAGAGCCCA--C 3732 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||||| || ||| ||||| ||||||||||| ||| Sbjct 3733 CCAAATCCCCGTCCGACGGGCGGGCGTGGGACATGTGGTGTA 3774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230360692320