Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq16395 246 5e-63 seq14878 246 5e-63 seq10554 246 5e-63 seq1039 192 9e-47 seq6976 96.9 6e-18 >seq16395 Length=3681 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 1787 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1729 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 1728 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 1670 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 1669 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 1610 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1609 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 1550 Query 253 TCTGTC 258 |||||| Sbjct 1549 TCTGTC 1544 >seq14878 Length=5361 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 2416 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 2358 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 2357 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 2299 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 2298 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 2239 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 2238 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 2179 Query 253 TCTGTC 258 |||||| Sbjct 2178 TCTGTC 2173 >seq10554 Length=21645 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 4018 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 4076 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 4077 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 4135 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 4136 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 4195 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 4196 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 4255 Query 253 TCTGTC 258 |||||| Sbjct 4256 TCTGTC 4261 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 12734 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 12792 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 12793 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 12851 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 12852 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 12911 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 12912 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 12971 Query 253 TCTGTC 258 |||||| Sbjct 12972 TCTGTC 12977 >seq1039 Length=155744 Score = 192 bits (212), Expect = 9e-47 Identities = 168/206 (82%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 56 CACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||||||||||||||| |||| || | |||||| | |||| | |||||||||||||| Sbjct 6348 CACAGACCTGTTATTGC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 6405 Query 116 CCAGCCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTAT 172 | | || ||| | | | | ||| |||||| | |||||||||||||| Sbjct 6406 TTGGACGCCGACCGCACGGGGCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTAT 6465 Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 6466 CGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAG 6525 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||||||||||| Sbjct 6526 AATCGAGAAAGAGCTATCAATCTGTC 6551 >seq6976 Length=18777 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/100 (83%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| || ||| ||| || | | |||||||||||||||||||||||||||||| ||| Sbjct 2197 TCAGTGTGGCACGCATGCAGCTCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 2139 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || ||| |||||| | |||| | |||||||||||||| Sbjct 2138 AATCTT-GTGTGGCTGAATGCCACTTGTCCCTCTAAGAAG 2100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796659529638