Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq6976 286 6e-75 seq6421 269 5e-70 seq2253 244 2e-62 seq102 176 8e-42 seq2785 174 3e-41 seq790 123 4e-26 seq14 116 6e-24 seq9849 100 5e-19 seq872 87.8 3e-15 seq1756 78.8 2e-12 >seq6976 Length=18777 Score = 286 bits (316), Expect = 6e-75 Identities = 226/272 (83%), Gaps = 8/272 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| Sbjct 6056 TCATCAGTAGGGTAAAACTAACCACTCTCACAACAGTCTAAACCCAGCTCACGTTCCCTA 5997 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 5996 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 5937 Query 151 CATCGAAGGATCAAAAAGCAACGT--------CGCTATGAACGCTTGGCTGCCACAAGCC 202 |||||||||||||||||| |||| |||||||| |||||||||||||||||| Sbjct 5936 CATCGAAGGATCAAAAAGTGACGTATATGCGATGCTATGAATGCTTGGCTGCCACAAGCC 5877 Query 203 AGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGA 262 ||||||||| ||||||||||||||| |||||| | | ||| | | | ||||| Sbjct 5876 AGTTATCCCCGTGGTAACTTTTCTGACACCTCCTACTTAAAACCCAAAAAGGCAGAAGGA 5817 Query 263 TCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||| ||||| | |||||| ||| |||||||| Sbjct 5816 TCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 5785 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG 249 || ||||||||||||||||||||||||||||||||||| |||||| || | ||| Sbjct 5284 GCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAA 5225 Query 250 AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 5224 AAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 5180 >seq6421 Length=36087 Score = 269 bits (298), Expect = 5e-70 Identities = 160/167 (96%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 35056 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCATGTTCCCTATTAGTGGGTGAACAAT 35115 Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 35116 CCAACGCTTACTGAATTCTGCTTCACAATAATAGGAAGAGCCGACATCGAAGGATCAAAA 35175 Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 35176 AGCGACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 35222 >seq2253 Length=83116 Score = 244 bits (270), Expect = 2e-62 Identities = 156/170 (92%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 50821 AAACGAACCTGTCTCACGACGGTCTAAACCCAGCTCACGGTCCCTATTAGTGGGTGAACA 50880 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 |||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 50881 ATCCAACGCTCGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAT 50940 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 50941 AAAGCGACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGCCATCCCTGT 50990 >seq102 Length=259240 Score = 176 bits (194), Expect = 8e-42 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 48 CTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 107 ||| | |||||| ||| ||||||| |||||||||| |||||| | || |||||| ||||| Sbjct 92029 CTAGCTTGTCTCGTGATGGTCTAATCCCAGCTCACTTTCCCTTTAAGCGGGTGACCAATC 91970 Query 108 CAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 |||||||| ||| |||||||| |||||||||| || | ||| ||||||||||||| Sbjct 91969 CAACGCTTGGTGAACTCTGCTTCACAATGATAGGAAAAGTCAACACTGAAGGATCAAAAA 91910 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || | ||||||||||| |||| | ||| |||||||||||| |||| |||||| ||||| Sbjct 91909 GCGCCATCGCTATGAACACTTGTCCACCATAAGCCAGTTATCTCTGTTGTAACTCTTCTG 91850 >seq2785 Length=59921 Score = 174 bits (192), Expect = 3e-41 Identities = 130/151 (86%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 15534 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 15475 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 15474 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 15415 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||| |||| || |||||| || Sbjct 15414 AATTCTGCTTCACAATGACAGAAAGAGCTGA 15384 >seq790 Length=218109 Score = 123 bits (136), Expect = 4e-26 Identities = 86/98 (88%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||||||| || |||||||||||||||||||| |||||||||| |||||||| |||| Sbjct 79401 CGGTCTAATCCGAGCTCACGTTCCCTATTAGTAGGTGAACAATACAACGCTTGGTAAATT 79342 Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 ||||||| || ||||||||||||||||||||||||| Sbjct 79341 CTGCTTCACAATAATAGGAAGAGCCGACATCGAAGGAT 79304 >seq14 Length=387567 Score = 116 bits (128), Expect = 6e-24 Identities = 84/96 (88%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACC-TGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||||| Sbjct 378390 TCATCAGTAGGGTAAAACTAACCATGTCTCACGACAGTCTAAACCCAGGTCACGTTCCCT 378449 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCT 125 |||||||||||| || |||| ||| ||||||| Sbjct 378450 GCTAGTGGGTGAACTATTCAACACTTGGTGAATTCT 378485 >seq9849 Length=4966 Score = 100 bits (110), Expect = 5e-19 Identities = 73/85 (86%), Gaps = 6/85 (7%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||| Sbjct 3643 TCATCAGTAGGGTAA------CCTGTCTCATGGCGGTCTACTCCCAGCTCACATTCCCTA 3696 Query 91 TTAGTGGGTGAACAATCCAACGCTT 115 ||| ||||||||||||||||| ||| Sbjct 3697 TTACTGGGTGAACAATCCAACACTT 3721 >seq872 Length=227678 Score = 87.8 bits (96), Expect = 3e-15 Identities = 96/127 (76%), Gaps = 8/127 (6%) Strand=Plus/Minus Query 66 GTCTAAACCCAGCTCACGTTCCCTATTAGTGGG-TGAACAATCCAACGCTTACCGAATTC 124 |||||||| ||| || | ||||| |||| ||| ||| |||||||| | || |||||| Sbjct 112670 GTCTAAACTCAGACCATGATCCCTGTTAGCGGGGTGAGCAATCCAAAGTTTGGTGAATTC 112611 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 |||||| ||||||| || ||||||| |||||||||| || ||||||||| Sbjct 112610 TGCTTCACAATGATAG-------CGGCATCGAATGATCAAAAAGTGACATCGCTATGAGT 112558 Query 185 GCTTGGC 191 ||||||| Sbjct 112557 GCTTGGC 112551 >seq1756 Length=155628 Score = 78.8 bits (86), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 13/164 (8%) Strand=Plus/Minus Query 78 CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA 137 ||| |||||| | ||||||||||||||| |||| |||| || ||||||| |||| Sbjct 91012 CTCCCGTTCCTTGTTAGTGGGTGAACAAGCCAATGCTTGGTGAGTTCTGCTAAATAATGA 90953 Query 138 TAGGAAGA--GC--CGACATC---GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 | | |||| || | ||||| |||||| ||||| | || || |||||| ||||| Sbjct 90952 TTGAAAGAATGCATCAACATCAAAAAAGGAT--AAAAGGGATGTTGCCATGAACTCTTGG 90895 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | ||||| | | ||| |||||||| |||| | | |||||| Sbjct 90894 CAGCCACTAAC----TATGCCTGTGGTTTCTTTCCAGACACCTC 90855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854244516288