Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq10554 87.8 2e-15 seq4076 87.8 2e-15 seq2685 87.8 2e-15 seq1039 87.8 2e-15 seq16395 73.4 5e-11 seq14878 73.4 5e-11 >seq10554 Length=21645 Score = 87.8 bits (96), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 4657 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 4715 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 4716 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 4775 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | | ||| |||| Sbjct 4776 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGACGGTAGCTCG 4835 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 4836 CCTCGCGGCGGACC 4849 Score = 87.8 bits (96), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 13373 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 13431 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 13432 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 13491 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | | ||| |||| Sbjct 13492 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGACGGTAGCTCG 13551 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 13552 CCTCGCGGCGGACC 13565 >seq4076 Length=38546 Score = 87.8 bits (96), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 36238 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 36296 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 36297 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 36356 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | | ||| |||| Sbjct 36357 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGACGGTAGCTCG 36416 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 36417 CCTCGCGGCGGACC 36430 >seq2685 Length=177281 Score = 87.8 bits (96), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 167464 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 167406 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 167405 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 167346 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | | ||| |||| Sbjct 167345 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGACGGTAGCTCG 167286 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 167285 CCTCGCGGCGGACC 167272 >seq1039 Length=155744 Score = 87.8 bits (96), Expect = 2e-15 Identities = 142/194 (73%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 6947 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 7005 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 7006 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 7065 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | | ||| |||| Sbjct 7066 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGACGGTAGCTCG 7125 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 7126 CCTCGCGGCGGACC 7139 >seq16395 Length=3681 Score = 73.4 bits (80), Expect = 5e-11 Identities = 78/100 (78%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 1148 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 1090 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||| |||||||| |||| ||||| Sbjct 1089 ACCGGGCCTGCTTTGAACA--CTAATTTTTTCAAAGTAAA 1052 >seq14878 Length=5361 Score = 73.4 bits (80), Expect = 5e-11 Identities = 78/100 (78%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 1777 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 1719 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||| |||||||| |||| ||||| Sbjct 1718 ACCGGGCCTGCTTTGAACA--CTAATTTTTTCAAAGTAAA 1681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595095070332