Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq10554 102 8e-20 seq4076 102 8e-20 seq2685 102 8e-20 seq1039 102 8e-20 seq16395 89.7 5e-16 seq14878 89.7 5e-16 seq8973 80.6 3e-13 >seq10554 Length=21645 Score = 102 bits (112), Expect = 8e-20 Identities = 131/178 (74%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 4755 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 4696 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 4695 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 4637 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 4636 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 4579 Score = 102 bits (112), Expect = 8e-20 Identities = 131/178 (74%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 13471 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 13412 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 13411 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 13353 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 13352 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 13295 >seq4076 Length=38546 Score = 102 bits (112), Expect = 8e-20 Identities = 131/178 (74%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 36336 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 36277 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 36276 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 36218 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 36217 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 36160 >seq2685 Length=177281 Score = 102 bits (112), Expect = 8e-20 Identities = 131/178 (74%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 167366 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 167425 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 167426 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 167484 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 167485 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 167542 >seq1039 Length=155744 Score = 102 bits (112), Expect = 8e-20 Identities = 131/178 (74%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 7045 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 6986 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 6985 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 6927 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 6926 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 6869 >seq16395 Length=3681 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/178 (72%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||| || |||||||||||||| | || |||||| | | | Sbjct 1052 TTTACTTTGAAAAAATT--AGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 1109 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 1110 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 1168 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1169 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 1226 >seq14878 Length=5361 Score = 89.7 bits (98), Expect = 5e-16 Identities = 129/178 (72%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||| || |||||||||||||| | || |||||| | | | Sbjct 1681 TTTACTTTGAAAAAATT--AGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 1738 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT---TCTAGGACCGCCCGTAAT 127 ||||||| ||||||||| | |||||||||||||| |||| ||| || | | || Sbjct 1739 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCAT 1797 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1798 GATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 1855 >seq8973 Length=17874 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/97 (80%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||| || |||||||||||||| | || |||||| | | | Sbjct 17781 TTTACTTTGAAAAAATT--AGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 17838 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGG 107 ||||||| ||||||||| | |||||||||||||| || Sbjct 17839 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGG 17874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511909737920