Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6976 562 1e-157 seq549 129 2e-27 seq4892 89.7 2e-15 >seq6976 Length=18777 Score = 562 bits (622), Expect = 1e-157 Identities = 444/528 (84%), Gaps = 17/528 (3%) Strand=Plus/Minus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| ||||||| |||| |||| | ||||||||||||||| ||| |||| |||| ||| Sbjct 18775 GGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCATTACCGTTTGACAGGTGT 18716 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG-GCCCGCGAAGG 138 ||||||||| ||| |||| |||||| || |||| | ||| || ||||| || Sbjct 18715 ACCGCCCCAGTCAAGCTCCTCACCTGCCACTGTCCCCGGAGCGGGTCACGCCCGGTGGGG 18656 Query 139 AC-----CTTAACGCCAGAAAATGG-------TCGGTGAAGACCAGTTCCGCTTCATTGA 186 | ||| || |||||| | |||| | || |||| ||| | Sbjct 18655 CCGGGCGCTTGACACCAGAAGCGAGAGCCCACTCGGGGCTCGCCTCC-CCGCCTCACCGG 18597 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTT 245 ||||| ||||||||||||| ||||||||||||||| ||| ||||| | ||||||||| Sbjct 18596 GTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAAGC--CTCCCACTT 18539 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||||||||||||||| ||| |||||| | | ||||||||||||||||||||||||||| Sbjct 18538 ATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTT 18479 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 18478 CTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGT 18419 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 18418 AGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 18359 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 18358 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTC 18299 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 18298 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 18251 Score = 542 bits (600), Expect = 9e-152 Identities = 441/530 (83%), Gaps = 15/530 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 5147 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 5088 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 5087 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCCCGGAGCGGGTC 5028 Query 127 G-GCCCGCGAAGGAC-----CTTAACGCCAGAA---AATGGTCGGTGAAGACCAGTT--- 174 ||||| || | ||| || |||||| | | || | | | | Sbjct 5027 ACGCCCGGCGGGGCCGGGCGCTTGACACCAGAAGCGAGAGCCCGCTCGGGGCTCGCCTCC 4968 Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAA 233 |||| ||| | ||||| |||||| |||||| ||||||||||||||| ||| ||||| Sbjct 4967 CCGCCTCACCGGGTAAGTGAAAAAATGATAAGAGTAGTGGTATTTCACCGGCGGCCGAAG 4908 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | |||||| ||||||||||||||||| ||| |||||| | | ||||||||||||||| Sbjct 4907 C--CTCCCAGTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCT 4850 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| Sbjct 4849 CAACAGGGTCTTCTTTCCCCACTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGC 4790 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 || ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 4789 TAAATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAG 4730 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 4729 ATAACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCACGCT 4670 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4669 TCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 4620 Score = 486 bits (538), Expect = 6e-135 Identities = 395/476 (83%), Gaps = 20/476 (4%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||||| || |||| ||| ||| |||| |||| | ||||||||||||||||||| Sbjct 5751 TTCTGCTCCACGGGAGGTTTTTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCA 5692 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||| ||| || |||||| ||||||||||||||| || |||| |||||| | Sbjct 5691 TTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGCCACTGTC-----CCCGGAGTG 5637 Query 128 GCCCGCGAAGGACC------TTAACGCCAGAAAA---TGGTCGGTGAAGACCAGTT---C 175 | | | ||| || || || ||||||| || ||| | | | | | | Sbjct 5636 GGTCACACAGGGCCGGGCGCTTGACACCAGAAATGAGTGTTCGCTCAGGGCTCGCCTCCC 5577 Query 176 CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAAC 234 ||| ||| | ||||| ||||||||||||| ||||||||||||||| ||| ||||| | Sbjct 5576 CGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCCGAAGC 5517 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||||||||||||||| ||| |||||| | | |||||||||||||||| Sbjct 5516 --CTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTC 5459 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 5458 AACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 5399 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 5398 AGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGA 5339 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 5338 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCNGC 5283 >seq549 Length=220404 Score = 129 bits (142), Expect = 2e-27 Identities = 105/128 (82%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 286 GTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGT 345 || |||| ||||||| |||||||||||||||||||| |||||| | || |||| Sbjct 95073 GTAAAGCACAACAGGCTCTTCTTTCCCCGCTGATTCTGCCAAGGC-------TTCACTGT 95021 Query 346 GGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 |||||||| |||||| || || |||||||||||||||| ||||||||||| |||||| Sbjct 95020 GGTTTCGCCAGATAGCAGGTA----CAGTGGGAATCTCGTTCATCCATTCATGTGCGTCA 94965 Query 406 CTAATTAG 413 |||||||| Sbjct 94964 CTAATTAG 94957 >seq4892 Length=27591 Score = 89.7 bits (98), Expect = 2e-15 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| Sbjct 24828 TTGAATTTCTTCACTTTGACATTCAGAGCATTGGGCAGAAATCACATCGTGTCAACA 24772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634902426304