Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4239 168 5e-37 seq7404 123 2e-23 seq1161 100 2e-16 >seq4239 Length=33969 Score = 168 bits (186), Expect = 5e-37 Identities = 385/573 (67%), Gaps = 6/573 (1%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || |||| || || || || |||||||| | ||| || | ||| || || | ||| Sbjct 30482 AGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATT 30541 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| || || |||| |||||||| | |||||| || || ||||| | ||| Sbjct 30542 TCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTG 30601 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || || |||||||||| |||||| || || ||||| || |||||||| || |||||| Sbjct 30602 CACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCG 30661 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTA-ATGT-T 66242 ||||| || | ||||||||| || |||| || | | ||| | |||| Sbjct 30662 TGCCACAGCTGCTGAGCCTTCACCAAGCGCTTGACCCTCCCCT--CCTTCTCATATGTGG 30719 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 ||||| | || || || ||||| ||| ||| | || |||| ||||| Sbjct 30720 TATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGAC 30779 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 ||||||| ||||| || | ||| || | ||| || || || || ||||| | Sbjct 30780 ACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACA 30839 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCG 66421 ||||||||| ||||| | |||| |||||||| | || ||| || || || || Sbjct 30840 TGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCC 30898 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 ||||| ||||| | || ||||| || |||||||| ||||| || | || | Sbjct 30899 AGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTC 30958 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||| |||||| |||||||| || || || ||||| | || | || ||| || || Sbjct 30959 TTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACT 31018 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 ||||| || || ||||| || ||||| ||||| Sbjct 31019 AGCCCATTGGAGTTGCCGTTTGTGCCAGCGATG 31051 >seq7404 Length=21843 Score = 123 bits (136), Expect = 2e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| | ||||||||||| ||||||| Sbjct 15685 TGGAGCGCTTCACTCAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGTTTCCAGA 15744 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||| || Sbjct 15745 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTACATCAAGG 15804 Query 61376 AGC 61378 ||| Sbjct 15805 AGC 15807 >seq1161 Length=118247 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| |||||| || Sbjct 53944 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 53885 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || || ||||| || || Sbjct 53884 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTCTGTCTGA 53825 Query 66170 GACTCAATGATGGCGTGCCA 66189 |||||||| || |||| ||| Sbjct 53824 GACTCAATTATAGCGTACCA 53805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397479824138720