Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3223 168 1e-39 seq1246 168 1e-39 seq789 163 5e-38 seq3066 116 7e-24 seq1146 75.2 2e-11 >seq3223 Length=3610317 Score = 168 bits (186), Expect = 1e-39 Identities = 210/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 1661661 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 1661602 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 1661601 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 1661543 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 1661542 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 1661483 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 1661482 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 1661423 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 1661422 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1661383 >seq1246 Length=655824 Score = 168 bits (186), Expect = 1e-39 Identities = 210/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 457498 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 457439 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 457438 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 457380 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 457379 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 457320 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 457319 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 457260 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 457259 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 457220 >seq789 Length=3829 Score = 163 bits (180), Expect = 5e-38 Identities = 209/281 (74%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 3512 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3571 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 3572 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 3630 Query 156 TCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| || || | | | |||||||| ||||| | |||||| Sbjct 3631 TCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 3690 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 3691 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 3750 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| || ||||||| Sbjct 3751 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAGCGAAAGT 3790 >seq3066 Length=4430537 Score = 116 bits (128), Expect = 7e-24 Identities = 167/231 (72%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATG 131 |||||||||||||||||||||| ||||||||||||| | || |||||| | | Sbjct 4343582 TTTACTTTGAAAAAATTAGAGTTTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAACTAC 4343523 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCT---AGGACCGCCGTAAT 187 ||||||| |||||| || | |||||||||||||| || ||||| | || | | | Sbjct 4343522 GAATAATGGAATAGTAC-TCCGGTTCTATTTTGTGGGTTTTCTGTCTGAACTGGGGCCGT 4343464 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| |||||| | |||||| | |||||||||||||||||| Sbjct 4343463 GATTAAGAGGGACGCCCGGGGGCATTCGTATTCTGCCGCTAGAGGTGAAATTCTTGGACC 4343404 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||| || | | |||||| || |||| |||||||||||||| Sbjct 4343403 GGCGCAAGACAGACGAAAGAGAAAGCATTTGTCAAGAATGTTTTCATTAAT 4343353 >seq1146 Length=2170412 Score = 75.2 bits (82), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 5/119 (4%) Strand=Plus/Plus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTAA 186 |||||||| ||||||||| | |||||||||||||| ||||| || || | | | | Sbjct 408964 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCA 409022 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||||| ||||| | |||||| | ||||| || |||||||||||||||||| Sbjct 409023 TGATTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCTGCTAGAGGTGAAATTCTTGGA 409081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915167464640