Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq161 109 1e-21 seq35 96.9 6e-18 seq51 73.4 7e-11 >seq161 Length=592076 Score = 109 bits (120), Expect = 1e-21 Identities = 164/226 (73%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 95 TGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGC 152 ||||||||||||||| |||| |||||| ||| |||||||| ||||||||| | Sbjct 516026 TGTTCAAAGCAGGCCCAGTTGCCTGAATACCACAGCTAGGAATAATGGAATAGGAC-TCT 516084 Query 153 GGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGG 208 ||||||||||||| ||||| || || | | | |||||||| ||||| | | ||| Sbjct 516085 GGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCCGGG 516144 Query 209 GTG-TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 | | |||||| | |||| | ||||||||||| | ||||| || | || Sbjct 516145 GACATTCGTATTCTGCCGCTAGAGATAAAATTCTTGGACCGACGCAAGACAGACGAAAGC 516204 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||| || ||||| |||||||||||||||| |||||||| || Sbjct 516205 GAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAATTT 516249 >seq35 Length=3010725 Score = 96.9 bits (106), Expect = 6e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 85 AAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTC-GAATACATTAGCATGGAATAATAGAA 142 |||||||||||||||||||||||| | | || | |||| ||| |||||||| ||| Sbjct 918594 AAAATTAGAGTGTTCAAAGCAGGCTCGGTCGTCTGGATACTGCAGCTAGGAATAATCGAA 918653 Query 143 TAGGACGTGCGGTTCTATTTTGTTGGTT---TCTAGGA-CCGCCGTAATGATTAATAGGG 198 |||||| | |||||| |||||| |||| ||| || | | | |||||||| |||| Sbjct 918654 TAGGAC-TCTGGTTCTGTTTTGTGGGTTTTCTCTCTGAGCTGGGGCTATGATTAAGAGGG 918712 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 | | | | || | |||| || |||||||||||||||||| ||||| Sbjct 918713 ACGGCCAGAGGCATTCATATTGCGCTGCTAGAGGTGAAATTCTTGGACCGGCACAAGACG 918772 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 | | || ||||| || ||||| |||||||||||||||| |||| ||| Sbjct 918773 GATGAAAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAA 918823 >seq51 Length=2307659 Score = 73.4 bits (80), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 4/83 (5%) Strand=Plus/Minus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAAT 138 |||||||| | ||||||||||||| |||| |||| | ||||| |||| |||||||| Sbjct 1280666 TGAAAAAAAT-GAGTGTTCAAAGCTGGCCCATTTGTTTAAATACTGCAGCAAGGAATAAT 1280608 Query 139 AGAATAGGACGTGCGGTTCTATT 161 ||||||||| | |||||||||| Sbjct 1280607 GGAATAGGAC-TCCGGTTCTATT 1280586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915142397312