Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 237 1e-57 seq390 132 4e-26 seq73 132 4e-26 seq18 105 5e-18 >seq2 Length=17630497 Score = 237 bits (262), Expect = 1e-57 Identities = 758/1157 (66%), Gaps = 49/1157 (4%) Strand=Plus/Minus Query 65432 TGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGAT 65491 |||||||| ||||| || || | ||| ||||||||| ||| || ||||| ||| Sbjct 6622644 TGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCAATGGAC 6622585 Query 65492 TCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAG 65551 || ||||||| || || ||||| || || || || ||||| || || | || || | Sbjct 6622584 TCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAGACTG 6622525 Query 65552 TTTCGCAATCCGTTCATTTCAATGTTGT----GACGCAATTCGTCCCAGTTCCACATCGG 65607 || | || |||| | | | || || | || ||| | ||||| ||||| | Sbjct 6622524 TTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGA-GCAGCTT---CCAGTCCCACAGC-- 6622471 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 || | | || | || | ||||| || | || ||| | || | ||| | || || Sbjct 6622470 TTGGTGGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGA 6622415 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGC 65727 || | | | ||||| || ||| ||| || | |||||| ||| || || Sbjct 6622414 GCCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTCCAGGGC 6622355 Query 65728 GGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTA 65787 |||| | || |||||||| || || | || || | |||||| ||| ||| | Sbjct 6622354 GGCATAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTTTCGAA 6622295 Query 65788 CGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 | || ||| |||| || ||||| |||| |||||| || || || || || || || Sbjct 6622294 TGCGTGACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTGGCCG 6622235 Query 65848 ATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGC 65906 |||||| ||||| | |||| |||||||| || |||||| | || ||||| || || Sbjct 6622234 GTGACGCTTGTTGGA-CTTCTCTGCCTCAGGCACTGGGTAGAAGTTAATATCTATGATCT 6622176 Query 65907 GATTCAAATTGCGTGTCACC-ACATG---CACGATACGTCGCAATTGTTCGAAATCAAAA 65962 |||||||| || || || | ||| ||| | | || || || |||||| Sbjct 6622175 TGTTCAAATTTT-TGACAATTACTTTGGTCAC-ATAAGCT--AGTTTTTTAAAGTCAAAA 6622120 Query 65963 TGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGG 66022 | || || || ||| ||| || || || || | || || || Sbjct 6622119 ------GTCCGCTCTGGGGTG---------ACATACATGTTGAGTGCGATTGAGGCCAGA 6622075 Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 || ||||| || | ||||||| ||| ||||| | ||||| |||||||| || ||| Sbjct 6622074 TTACAGACGGCGACCTCGTCACCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTG 6622015 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 | |||||||||| ||||| || || ||||| | ||||| | || ||||| | | Sbjct 6622014 CTCTTGATGGTGCCCAGGTTCTGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGC 6621955 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202 ||||| || ||||| || || |||||||||||||||||||||||||| | ||| Sbjct 6621954 ATGTATGGCGTGCCAGTTTCCGTCTGGGACTCAATGATGGCGTGCCAAAGCTGCTGAGCC 6621895 Query 66203 TTCACCGTACGTACCGCCCTACCTTTGCGTTCGTA-ATG-TTCGTAGAGGTGTTCGAAGG 66260 |||||| ||| | ||| |||| | ||| | ||| |||||| | ||||| Sbjct 6621894 TTCACCACACGCTTCACCCGGCCTT--CTTTCTCATATGAGGTGTAGAGCTTCTCGAACT 6621837 Query 66261 ATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCAC 66320 || ||||| ||| ||| | || || | || |||||||||||| ||||| || Sbjct 6621836 CCTCCCCCCAGCACTCGTCCAGCCCGGGGCATTCGTTTGGACACATCAGAGACCAGTCCT 6621777 Query 66321 CATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 | | || ||| || | ||| || || || || ||||| |||||||||||||| || Sbjct 6621776 CGT--TGGTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTC 6621719 Query 66379 GCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGT 66437 | || | |||||||| | || ||| ||||| || || ||||| ||||| | | Sbjct 6621718 TCTGGCCCTCTGCTCCTCCTTTCCTGTG-TTTTTCTTCAGCTCCAGGAAGTCAAACACAT 6621660 Query 66438 CGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGT 66497 | ||||| || |||| ||| |||||||| | || | ||| ||| || |||| Sbjct 6621659 CAAAGTGCCAGGGCTCCAAGTACATGGCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGT 6621600 Query 66498 CGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGC 66557 ||||||| || || |||||| | || | || ||| || || || || || || |||| Sbjct 6621599 CGACGTACCGCGCCGTGTTGTTGTACACTCTCAGCATGGGGACTAGACCATTGGAGTTGC 6621540 Query 66558 CATTGGTGCCGTCGATG 66574 | ||||||||| ||||| Sbjct 6621539 CGTTGGTGCCGGCGATG 6621523 >seq390 Length=2268 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| | ||||||||||| ||||||| Sbjct 1528 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGGTTCCAGA 1587 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | || ||||| || |||||||||| Sbjct 1588 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTGATCGACACCTACATCAGGG 1647 Query 61376 AGC 61378 ||| Sbjct 1648 AGC 1650 >seq73 Length=1910340 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| | ||||||||||| ||||||| Sbjct 1745766 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGGTTCCAGA 1745707 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | || ||||| || |||||||||| Sbjct 1745706 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTGATCGACACCTACATCAGGG 1745647 Query 61376 AGC 61378 ||| Sbjct 1745646 AGC 1745644 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| | ||||||||||| ||||||| Sbjct 1749658 TGGAGCGCTTCACCCAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGGTTCCAGA 1749599 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | || ||||| || |||||||||| Sbjct 1749598 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTCCTGATCGACACCTACATCAGGG 1749539 Query 61376 AGC 61378 ||| Sbjct 1749538 AGC 1749536 >seq18 Length=14161719 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| ||||| || Sbjct 3645546 GTGTACTCTACTATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 3645605 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | ||||| || |||||||| | |||||||| ||||| || || ||| Sbjct 3645606 TTACTCTTCCTGTTGCAGGCGTCCTTGTAGAGTATGTACGGTGTGCCCGTTTCTGTTTGA 3645665 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 || || |||| ||||| |||||| Sbjct 3645666 GATTCGATGACGGCGTACCAAAG 3645688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541098561280