Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1539 178 2e-42 seq30570 73.4 6e-11 >seq1539 Length=10098 Score = 178 bits (196), Expect = 2e-42 Identities = 185/235 (79%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 7173 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 7230 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 7231 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCAGCGGGTT 7290 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| ||||| |||| | | || || ||| | || ||||||| |||||||||| Sbjct 7291 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGCGCGTGC 7349 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 7350 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 7403 >seq30570 Length=2517 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||| | | | |||| |||| | ||||||||||||||||||| |||||||||| ||| Sbjct 579 TCAGTGTGGTGTGTGTGCAGCCCTGGACATCTAAGGGCATCACAGGCCTGTTATTG-CTC 637 Query 221 AAACTTCCGTGG 232 || ||| |||| Sbjct 638 AATCTTGTGTGG 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751744937580