Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1539 246 5e-63 seq24332 120 5e-25 seq12179 78.8 1e-12 seq30570 75.2 2e-11 >seq1539 Length=10098 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 7332 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 7390 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 7391 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 7449 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 7450 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 7509 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 7510 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 7569 Query 253 TCTGTC 258 |||||| Sbjct 7570 TCTGTC 7575 >seq24332 Length=12896 Score = 120 bits (132), Expect = 5e-25 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| | ||| ||||| ||||||||||||||||| |||||| |||||| || ||| Sbjct 6007 GTCTTGTTTGATATAAGAATTCACCAGACAAATCACTCCGCCAACTCAGAACGACCGTGC 6066 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||| |||||| |||||||||||||||||||| Sbjct 6067 ACCACCACCCCTAGAATTGAGAAAGAGCTATCAATCTGT 6105 >seq12179 Length=72079 Score = 78.8 bits (86), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||| | | ||| | ||| || |||||||| |||||||||||||| || Sbjct 28492 TCAGTGTGGCGCGCATCCAGCCTTGGACAGCTGAGGGCATCGCAGACCTGTTATTG-TTC 28434 Query 76 AAACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || || ||| |||||| | |||| | ||||||| |||||| Sbjct 28433 AATCT--CATGTGGCTGCACGCCACTTGTCCCTCCAAGAAG 28395 >seq30570 Length=2517 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| | | | |||| |||| | ||||||||||||||||||| |||||||||| ||| Sbjct 579 TCAGTGTGGTGTGTGTGCAGCCCTGGACATCTAAGGGCATCACAGGCCTGTTATTG-CTC 637 Query 76 AAACTTCCATTGGCTGGAAGCCAAT 100 || ||| ||| || |||||||| Sbjct 638 AATCTT-GTGTGGTTGAAAGCCAAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796529742372