Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15996 219 3e-52 seq30050 123 2e-23 seq25531 120 2e-22 >seq15996 Length=6831 Score = 219 bits (242), Expect = 3e-52 Identities = 992/1553 (64%), Gaps = 71/1553 (5%) Strand=Plus/Minus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || |||| |||| | | || ||||| || || || || | ||| ||||||||| Sbjct 2433 CAGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCT 2374 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || ||| | ||| || ||||||| || || ||||| || || || || ||||| Sbjct 2373 GGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 2314 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 || || | || || ||| | || |||| | | | || || | || | | Sbjct 2313 CGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTT 2254 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||||| | || ||| | | || | || | ||||| || | || ||| | || Sbjct 2253 CCAGTCCAGCA--GGTCGGTGGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCC 2200 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | ||| |||| || || | | | ||||| || ||| ||| || | || Sbjct 2199 CTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCA 2140 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 ||| | ||| || ||||| | || |||||||| || || | || || | || Sbjct 2139 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGC 2080 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 ||| ||| ||| |||| | ||| |||| || | ||| |||| ||| || || || Sbjct 2079 CTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCC 2020 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAAT 65891 || ||||| || | || ||| ||||| | |||| || ||||| || |||||||| | Sbjct 2019 GATTCCGATCGGCCTGTGGCGCTTGTTGGA-CTTCTCCGCTTCAGGCACTGGGTAGTAGT 1961 Query 65892 TGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAA----- 65946 |||| |||||||| ||||| || | | || | || || | ||| ||| Sbjct 1960 TGATTTCGATAATCTTGTTCAAGTT---TTTGACGA--TG-ACTTTG-GTCACAAACGCT 1908 Query 65947 --TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 || || || |||||| | || || || ||| || ||| ||| Sbjct 1907 AGTTTTTTAAAGTCAAAA------GTCCGCTCAGGGGTGACGTACATG------TTG--- 1863 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC-GGTATACTCGACAAT 66063 || || | || || || || || || |||| ||| || | || ||| ||||| || || Sbjct 1862 AGCGCGATGGAGGCCAGATTACACACCGCTACCTCATC-GTCGCTGGTGTACTCAACTAT 1804 Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT 66123 ||| ||||| || || |||| |||||||||| |||||| || || ||||| | || Sbjct 1803 TTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTT 1744 Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||| || || ||||||| ||||||||| || ||||| || |||||||| || ||||| Sbjct 1743 GCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGC 1684 Query 66184 GTGCCAAAGAGCGCGTGCCTTCACCGTACGTA----CCGCCCTACCTTTGCGTTCGTAAT 66239 |||||| | | ||||||||| || || ||| |||| | | ||| | Sbjct 1683 GTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGT 1624 Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299 || | || | ||||| || ||||| ||| ||| | || |||| || | Sbjct 1623 GTAC----AGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCG 1568 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTAT 66357 |||||||||| ||||| || | || ||| ||| ||| || || || || || Sbjct 1567 GACACATCAGAGACCAGTCTTGGT--TGCTCTCCACTCTCTTCATGAACAGGTCGGGGAT 1510 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 ||| | ||||||||| || || | || | |||||||| | ||| || || || Sbjct 1509 CCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAG 1450 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 || ||||| ||||| | |||| ||||| || |||||||| ||||| |||| || Sbjct 1449 CTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGG 1390 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 | ||| ||| || ||||||||||| || || |||||| |||| | || ||| || Sbjct 1389 CCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGG 1330 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATAT 66596 ||||||||||| || ||||| ||||||||| |||| | | ||| ||| | || || Sbjct 1329 GACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGAT-GTAGCTCCCCGTCGATCGGATGC 1271 Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656 | || || || || || ||||||| ||| |||||| ||||| | || | Sbjct 1270 AGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCG 1211 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAG 66714 | | | ||||| || ||| ||| |||| |||| || ||| |||| || || || Sbjct 1210 TGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC--AG 1153 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || || || || | || |||||| ||||| | ||||| || || | | Sbjct 1152 CTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTC 1093 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGT---TTTCGCCATGAATCCCGAG 66831 |||| ||||||||||| ||| | || |||| ||| | || ||||||| Sbjct 1092 CGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTG---TGGATCCCGAC 1036 Query 66832 TGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCA 66887 | || ||| || | || || || || || ||| |||| ||||| | || Sbjct 1035 AGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCG----TTGATCTTCA 980 Query 66888 TTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 | |||||| || ||||| ||||||| || ||| | ||| ||||||| Sbjct 979 ACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCG 927 >seq30050 Length=2981 Score = 123 bits (136), Expect = 2e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| | |||||||| || ||||||| Sbjct 2812 TGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTATGGTTTCCAGA 2871 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || |||||||||| Sbjct 2872 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTACATCAGGG 2931 Query 61376 AGC 61378 ||| Sbjct 2932 AGC 2934 >seq25531 Length=26544 Score = 120 bits (132), Expect = 2e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| ||||| || ||||||||||| ||| | |||||||||| |||||| || Sbjct 22108 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 22167 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || || |||||||| || Sbjct 22168 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCTGA 22227 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||||| ||| || | ||||||||| Sbjct 22228 GACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACC 22266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397398354255680