Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 219 3e-52
seq30050 123 2e-23
seq25531 120 2e-22
>seq15996
Length=6831
Score = 219 bits (242), Expect = 3e-52
Identities = 992/1553 (64%), Gaps = 71/1553 (5%)
Strand=Plus/Minus
Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472
|| |||| |||| | | || ||||| || || || || | ||| |||||||||
Sbjct 2433 CAGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCT 2374
Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532
||| || ||| | ||| || ||||||| || || ||||| || || || || |||||
Sbjct 2373 GGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 2314
Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592
|| || | || || ||| | || |||| | | | || || | || | |
Sbjct 2313 CGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTT 2254
Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652
||||| | || ||| | | || | || | ||||| || | || ||| | ||
Sbjct 2253 CCAGTCCAGCA--GGTCGGTGGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCC 2200
Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712
| ||| |||| || || | | | ||||| || ||| ||| || | ||
Sbjct 2199 CTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCA 2140
Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772
||| | ||| || ||||| | || |||||||| || || | || || | ||
Sbjct 2139 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGC 2080
Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832
||| ||| ||| |||| | ||| |||| || | ||| |||| ||| || || ||
Sbjct 2079 CTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCC 2020
Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAAT 65891
|| ||||| || | || ||| ||||| | |||| || ||||| || |||||||| |
Sbjct 2019 GATTCCGATCGGCCTGTGGCGCTTGTTGGA-CTTCTCCGCTTCAGGCACTGGGTAGTAGT 1961
Query 65892 TGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAA----- 65946
|||| |||||||| ||||| || | | || | || || | ||| |||
Sbjct 1960 TGATTTCGATAATCTTGTTCAAGTT---TTTGACGA--TG-ACTTTG-GTCACAAACGCT 1908
Query 65947 --TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004
|| || || |||||| | || || || ||| || ||| |||
Sbjct 1907 AGTTTTTTAAAGTCAAAA------GTCCGCTCAGGGGTGACGTACATG------TTG--- 1863
Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC-GGTATACTCGACAAT 66063
|| || | || || || || || || |||| ||| || | || ||| ||||| || ||
Sbjct 1862 AGCGCGATGGAGGCCAGATTACACACCGCTACCTCATC-GTCGCTGGTGTACTCAACTAT 1804
Query 66064 TTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT 66123
||| ||||| || || |||| |||||||||| |||||| || || ||||| | ||
Sbjct 1803 TTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTT 1744
Query 66124 GCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183
||| || || ||||||| ||||||||| || ||||| || |||||||| || |||||
Sbjct 1743 GCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGC 1684
Query 66184 GTGCCAAAGAGCGCGTGCCTTCACCGTACGTA----CCGCCCTACCTTTGCGTTCGTAAT 66239
|||||| | | ||||||||| || || ||| |||| | | ||| |
Sbjct 1683 GTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGT 1624
Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299
|| | || | ||||| || ||||| ||| ||| | || |||| || |
Sbjct 1623 GTAC----AGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCG 1568
Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTAT 66357
|||||||||| ||||| || | || ||| ||| ||| || || || || ||
Sbjct 1567 GACACATCAGAGACCAGTCTTGGT--TGCTCTCCACTCTCTTCATGAACAGGTCGGGGAT 1510
Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417
||| | ||||||||| || || | || | |||||||| | ||| || || ||
Sbjct 1509 CCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAG 1450
Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477
|| ||||| ||||| | |||| ||||| || |||||||| ||||| |||| ||
Sbjct 1449 CTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGG 1390
Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537
| ||| ||| || ||||||||||| || || |||||| |||| | || ||| ||
Sbjct 1389 CCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGG 1330
Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATAT 66596
||||||||||| || ||||| ||||||||| |||| | | ||| ||| | || ||
Sbjct 1329 GACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGAT-GTAGCTCCCCGTCGATCGGATGC 1271
Query 66597 CGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG 66656
| || || || || || ||||||| ||| |||||| ||||| | || |
Sbjct 1270 AGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCG 1211
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAG 66714
| | | ||||| || ||| ||| |||| |||| || ||| |||| || || ||
Sbjct 1210 TGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC--AG 1153
Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774
|| || || || | || |||||| ||||| | ||||| || || | |
Sbjct 1152 CTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTC 1093
Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGT---TTTCGCCATGAATCCCGAG 66831
|||| ||||||||||| ||| | || |||| ||| | || |||||||
Sbjct 1092 CGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTG---TGGATCCCGAC 1036
Query 66832 TGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCA 66887
| || ||| || | || || || || || ||| |||| ||||| | ||
Sbjct 1035 AGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCG----TTGATCTTCA 980
Query 66888 TTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940
| |||||| || ||||| ||||||| || ||| | ||| |||||||
Sbjct 979 ACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCG 927
>seq30050
Length=2981
Score = 123 bits (136), Expect = 2e-23
Identities = 101/123 (82%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| | ||||| ||||| ||| ||||||| | |||||||| || |||||||
Sbjct 2812 TGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTATGGTTTCCAGA 2871
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
| ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||||||
Sbjct 2872 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTACATCAGGG 2931
Query 61376 AGC 61378
|||
Sbjct 2932 AGC 2934
>seq25531
Length=26544
Score = 120 bits (132), Expect = 2e-22
Identities = 122/159 (77%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109
|| ||||| ||||| || ||||||||||| ||| | |||||||||| |||||| ||
Sbjct 22108 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 22167
Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169
|| ||||| | ||||| || |||||||| | |||||| || || |||||||| ||
Sbjct 22168 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCTGA 22227
Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208
|||||||||||||||| ||| || | |||||||||
Sbjct 22228 GACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACC 22266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397398354255680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |