Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq64 134 3e-29 seq4 131 3e-28 seq87 116 7e-24 >seq64 Length=3855204 Score = 134 bits (148), Expect = 3e-29 Identities = 169/228 (74%), Gaps = 13/228 (6%) Strand=Plus/Plus Query 87 AATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATA 144 |||||||||||||||||||||||| | || |||||| ||| |||||||| ||||| Sbjct 3440233 AATTAGAGTGTTCAAAGCAGGCCTGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATA 3440292 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC----GCCGTAATGATTAATAGG 197 |||| | |||||||||||||| ||||| || || | ||| |||||||| ||| Sbjct 3440293 GGAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTTGGGCC---ATGATTAAGAGG 3440348 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 ||| | | |||| | ||||| | |||||||||||||||||| ||||| Sbjct 3440349 GATGGCCAGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGAC 3440408 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 || | |||||||| || ||||| |||||||||||||||| |||| Sbjct 3440409 GGACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAATGAA 3440456 >seq4 Length=16571924 Score = 131 bits (144), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131 |||||||||||||||||||||| ||||||||||||| | ||| |||||| | | | Sbjct 8230944 TTTACTTTGAAAAAATTAGAGTTTTCAAAGCAGGCCCTGTTGCCTGAATACCGCAACTAG 8230885 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT---CTAGGACC-GCCGTAAT 187 ||||||| |||| | || | |||||||||||||| ||||| || || | | | | Sbjct 8230884 GAATAATGGAATGGTAC-TCCGGTTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCTGT 8230826 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||| ||||| |||||| | ||||||| | |||||||||||||||||| Sbjct 8230825 GATTAAGAGGGACGCCCGGGGGCATTAGTATTCTGCCGCTAGAGGTGAAATTCTTGGACC 8230766 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 ||||| || | |||||||| || |||| |||||||||||||| Sbjct 8230765 GGCGCAAGACAGACGAAAGCGAAAGCATTTGTCAAGAATGTTTTCATTAAT 8230715 >seq87 Length=2722511 Score = 116 bits (128), Expect = 7e-24 Identities = 159/215 (74%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTG-AAAAAATTAGAGTG 96 |||| ||| ||| |||| | | || | | | | | ||||||||| |||||||||||||| Sbjct 1140508 ATGCTCTTAGCTGAGTGTCCTGCGGGGTCCGAAGCGTTTACTTTGGAAAAAATTAGAGTG 1140449 Query 97 TTCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||||| | || |||||| ||| |||||||| ||||||||| | ||| Sbjct 1140448 TTCAAAGCAGGCCCAGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGG 1140390 Query 155 TTCTATTTTGTTGG-TTTCT---AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 ||||||||||| || ||||| | || | | |||||||| ||||| | |||| | Sbjct 1140389 TTCTATTTTGTGGGTTTTCTCTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGTGC 1140330 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 | ||||| | |||||||||||||||||| Sbjct 1140329 ATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 1140295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915116725952