Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neolamprologus_20brichardi_20[refseq_20GCF_5F000239395.1_202011-12- 22] 9,099 sequences; 847,910,432 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq38 205 7e-48 seq29 129 5e-25 seq89 120 2e-22 seq13 95.1 1e-14 >seq38 Length=4945250 Score = 205 bits (226), Expect = 7e-48 Identities = 394/574 (69%), Gaps = 8/574 (1%) Strand=Plus/Minus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || || ||||| || || | |||||| || |||||||| ||| Sbjct 1347144 AGAGCGACAGAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATT 1347085 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| || || ||||| |||||||||| |||||| || || ||||| | ||| Sbjct 1347084 TCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 1347025 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||| ||||| | ||||||||| || ||||| || || ||||| ||||| || Sbjct 1347024 CAGGCATCTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCA 1346965 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAA-TGTTC 66243 | ||| || | ||||||||| ||| | |||| || | | || || || | Sbjct 1346964 TACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGT- 1346906 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| | ||| || || ||||| || ||| | || || | | ||||| Sbjct 1346905 GTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACA 1346846 Query 66304 CATCAGCGACCAATCACCATCCTGTTCTACAC--GACGCATAAATAGATCAGGTATCCAG 66361 |||||| ||||| || | |||||| ||| | ||| || || ||||| ||||| Sbjct 1346845 CATCAGGGACCAGTCTGTGT--TGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCAC 1346788 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTC 66420 ||||||||||| | || | ||||| |||||||| | || ||| || || || || Sbjct 1346787 AGGGCGTAGAACAAGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTC 1346729 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 || || || || | ||| ||||| || |||||||| |||||||| | ||| | Sbjct 1346728 CAGAAAGTCGAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCT 1346669 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 |||| ||| || || || || || || || |||||| | || | |||||| || || Sbjct 1346668 TTTGTTGCCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGAC 1346609 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 ||||||||| || ||| ||||||||| ||||| Sbjct 1346608 GAGCCCGTTGGAACAGCCGTTGGTGCCGGCGATG 1346575 >seq29 Length=6224470 Score = 129 bits (142), Expect = 5e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| ||| ||||||| || ||||||||||| || |||| Sbjct 1451945 TGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTTCAGA 1451886 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||||||||||||||| | || ||||| |||||||||| || Sbjct 1451885 TCGCCATGGAGAACATCCACTCGGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 1451826 Query 61376 A 61376 | Sbjct 1451825 A 1451825 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| ||| ||||||| || ||||||||||| || |||| Sbjct 1440482 TGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAGGCCCGGTGTTTCTACGGTTTTCAGA 1440541 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| |||||||||| || Sbjct 1440542 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 1440601 Query 61376 A 61376 | Sbjct 1440602 A 1440602 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | |||||||||||||| | ||||| |||| |||||| Sbjct 1440114 GACAACCCTCGCCGCTTCGTCATCTTCCCCATCGAGTACCACGATATCTGGCAGATGTAC 1440173 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||| ||||||| |||||||| Sbjct 1440174 AAGAAGGCAGAGGCGTCCTTTTGGACGGCAGAGGAGGT 1440211 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || || ||||| || ||||| | |||||||||||||| | ||||| |||| |||||| Sbjct 1452313 GACAACCCTCGCCGCTTCGTCATCTTCCCCATCGAGTACCACGATATCTGGCAGATGTAC 1452254 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || ||||| || || ||||| ||||||| |||||||| Sbjct 1452253 AAGAAGGCAGAGGCGTCCTTTTGGACGGCAGAGGAGGT 1452216 >seq89 Length=2585884 Score = 120 bits (132), Expect = 2e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| ||| || ||| Sbjct 777465 GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGA 777524 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | |||||| ||||||||||| | |||||| || || || || || || Sbjct 777525 TTACTCTTTCTATTGCAGGCATCCTTGTAAACCATGTATGGTGTACCAGTTTCTGTCTGC 777584 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||||| ||| || | ||||||||| Sbjct 777585 GACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACC 777623 >seq13 Length=10688992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | || ||||| | |||||| |||| ||||| ||| |||| | Sbjct 6293997 CAGGAGGTGCAGGTCCCTGAAGCGCGATCCTTCTACAGCTTTCAGATCCTCATAGAGACT 6294056 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||||||| |||||||||||| | |||||| | || ||||| ||||| Sbjct 6294057 GTCCACTCAGAGATGTACAGTATGCTCATCAACACTTACATTAGGGA 6294103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397523912069360