Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1 140 6e-31 seq14 131 3e-28 seq390 104 4e-20 >seq1 Length=98476147 Score = 140 bits (154), Expect = 6e-31 Identities = 203/280 (73%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 29705134 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 29705193 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| |||| | |||| Sbjct 29705194 TCAAAGCAGGCCCGGTCGCCTGAATACCACAGCTAGGAATAAT------GGAC-TCCGGT 29705246 Query 156 TCTATTTTGTTGG--TTTCT-AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||| || ||||| | || | | ||||||| |||| | |||||| | Sbjct 29705247 TCTATTTTGTGGGGTTTTCTCTGAACTGAGGCCTTGATTAAGAGGGGCGGCCGGGGGCAT 29705306 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| | |||||||||||||||||| ||||| || | ||||||| Sbjct 29705307 TCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACAAAAGCGAAAG 29705366 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || ||||| |||||||||||||||| |||||||||| Sbjct 29705367 CATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 29705405 >seq14 Length=44251975 Score = 131 bits (144), Expect = 3e-28 Identities = 176/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATG 131 || |||||||||| ||| ||||||||||||||||||| |||| |||||| ||| | Sbjct 18931849 TTCACTTTGAAAACATTTGAGTGTTCAAAGCAGGCCTGGTTGCCTGAATACCGCAGCTAG 18931908 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCT-AGGACCGCCGTAATGA 189 |||| || ||||||||| | |||||| |||| || || ||||| | || | | |||| Sbjct 18931909 GAATTATGGAATAGGAC-TCCGGTTCAATTTAGTGGGTTTTCTCTGAACTGGGGCCATGA 18931967 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| | |||||| | ||||| | |||||||||||||||||| Sbjct 18931968 TTAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGG 18932027 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| | | |||| |||||| ||||| | |||||||||||||| ||| ||| Sbjct 18932028 CGCAAGACGGATGAAGGCGACAGCGTTTGCCAAGAACGTTTTCATTAATCAACGAATGAA 18932087 >seq390 Length=319786 Score = 104 bits (114), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || | | | | | ||||||||||||| |||||||||| Sbjct 26994 ATGCTCTTAGCTGAGTGTCCCGCGGGGTCCGAAGCATTTACTTTGAAAAGATTAGAGTGT 27053 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| |||||| || | |||| Sbjct 27054 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGCAC-TCCGGT 27112 Query 156 TCTATTTTGTTGGTTTCT---AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||| |||| | | || | | | |||||| | |||| | ||| || | Sbjct 27113 TCTATTTTGTGTGTTTTTCTCTGAACTGGGGCCACGATTAAGATGGATGGCCGGCGGCAT 27172 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||| | ||||||||||| |||| Sbjct 27173 TCGTATTGTGCCGCTAGAGGTGAAATCCTTG 27203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915146030656