Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2 250 4e-64 seq5 241 2e-61 seq1 223 6e-56 seq14 163 5e-38 seq209 147 3e-33 seq10 111 3e-22 >seq2 Length=88342039 Score = 250 bits (276), Expect = 4e-64 Identities = 205/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 76936540 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 76936598 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || |||| | | Sbjct 76936599 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCACACGGG 76936657 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 76936658 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 76936717 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 76936718 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 76936777 Query 253 TCTGTC 258 |||||| Sbjct 76936778 TCTGTC 76936783 >seq5 Length=70255127 Score = 241 bits (266), Expect = 2e-61 Identities = 203/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 12567928 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 12567870 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || |||| | | Sbjct 12567869 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCACACGGG 12567811 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 12567810 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 12567751 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| Sbjct 12567750 GCTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATCGAGAAAGAGCCATCAA 12567691 Query 253 TCTGTC 258 |||||| Sbjct 12567690 TCTGTC 12567685 >seq1 Length=98476147 Score = 223 bits (246), Expect = 6e-56 Identities = 199/246 (81%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||| ||| |||| | ||||||||||||||||||||||| ||||||| || Sbjct 29705911 TCAGTGTGGCGCGCTTGCAGCCCCGGACATCTAAGGGCATCACAGACCTTTTATTGC-TC 29705853 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | | |||||||||||| | | || || | | Sbjct 29705852 AATCT-CGTGTGGCTGAACGCCACTTGCCCCTCTAAGAAGTTGGACGCCGACTGCACGGG 29705794 Query 136 ---ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 29705793 GACACGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 29705734 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct 29705733 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGA 29705674 Query 253 TCTGTC 258 |||||| Sbjct 29705673 TCTGTC 29705668 >seq14 Length=44251975 Score = 163 bits (180), Expect = 5e-38 Identities = 96/100 (96%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 35059093 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCAGGC 35059034 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 35059033 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 35058994 >seq209 Length=81853 Score = 147 bits (162), Expect = 3e-33 Identities = 166/220 (75%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101 |||||||||||||| |||||||| ||||||| |||| ||| | ||||| | |||| | Sbjct 67171 ACATCTAAGGGCATTACAGACCTCTTATTGC-TCAATCTTGTGT-GGCTGAATGCCACTT 67114 Query 102 GTCCCTCTAAGAAGCCAGCCACCAACCATA---GTCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||||||| | | | |||| | | | | || |||||| | | | Sbjct 67113 GTCCCTCTAAGAAGTTGGACGCTGACCACACGGGACTACATAACTTGTTAGCATGCTGGG 67054 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| | |||||| | |||| ||||||||||||| ||||||||||||| ||| ||||||| Sbjct 67053 GTCTTGATCGTTACCAGAATCAACCAGACAAATCGCTCCACCAACTAAAAACTGCCATGC 66994 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||||| | ||||| |||||||||||||||| Sbjct 66993 ATCACCACCTACAGAAT-------GAGCTATCAATCTGTC 66961 >seq10 Length=57197669 Score = 111 bits (122), Expect = 3e-22 Identities = 86/100 (86%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 56825139 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 56825197 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 || | || |||||| | |||| | |||||||||||||| Sbjct 56825198 AATC-TCGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAG 56825236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796754481057