Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 250 2e-61 seq4 118 8e-22 seq11 102 6e-17 >seq6 Length=67274854 Score = 250 bits (276), Expect = 2e-61 Identities = 997/1546 (64%), Gaps = 59/1546 (4%) Strand=Plus/Plus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || |||| |||| | | |||||||| || || || || | || ||||||||| Sbjct 22087198 CAGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCT 22087257 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || ||| | ||| || |||| || || || ||||| || || || || ||||| Sbjct 22087258 GGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCAT 22087317 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 || |||| || || |||| || || | | | || || | || | Sbjct 22087318 CGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTT 22087377 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||||| ||||| ||| | | | || | | | |||||| || | ||||||| | || Sbjct 22087378 CCAGTCCCACA--GGTCTGTAGGCGTCTT----GTCCCACATGTCGTATTGCAGGATGCC 22087431 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | ||| | || ||||| | | | |||||| ||| ||| || || | || Sbjct 22087432 CTTGCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCA 22087491 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 ||| | ||| || || || | || |||||||| ||||| | || || | || Sbjct 22087492 GCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGC 22087551 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 ||| ||| ||| | || || |||||||| || | || |||| |||||||||||| Sbjct 22087552 CTCTGGGCTTTCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCC 22087611 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAAT 65891 ||| || || || | || ||| ||||| | |||| || ||||| || |||||||| | Sbjct 22087612 AATTCCTATTGGCCTGTGGCGCTTGTTGGA-CTTCTCAGCTTCAGGAACTGGGTAGTAGT 22087670 Query 65892 TGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTG-- 65949 |||| || || | || | || | | || | | || | ||| || || Sbjct 22087671 TGATTTCAATGACCTTGTTGAGGTT---TTTGACAATA---ACTTTG-GTCACAGATGCC 22087723 Query 65950 ---TTC--GAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGA 66004 ||| ||| |||||| | || || || ||| || ||| ||| || Sbjct 22087724 AGCTTCTTGAAGTCAAAA------GTCCGTTCTGGTGTGACGTACATG------TTGAGA 22087771 Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 |||| || || ||||| || || || | |||||| ||| ||||| |||| | Sbjct 22087772 ---GCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACT 22087828 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 ||||||||||| || ||||| |||||||||| |||||| || |||||||| | || Sbjct 22087829 TCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTA 22087888 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 |||||||| ||||||| |||||| || || || || || ||||||||||| ||||| Sbjct 22087889 CATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCA 22087948 Query 66185 TGCCAAAGAGC-GC-GTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTT 66242 | || ||||| || | ||||||||| ||| | |||| || | | ||| || | Sbjct 22087949 TACC--AGAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCGTTTTCATATTTAG 22088006 Query 66243 CGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGAC 66302 ||| || | ||| || || ||||| ||| ||| | ||||||| || |||| Sbjct 22088007 TGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGAC 22088066 Query 66303 ACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGA 66362 |||| || ||||| | | || || | ||| || ||||| || ||||| | Sbjct 22088067 ACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATGAACAGATCTGGAATCCACA 22088126 Query 66363 GGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCG 66421 |||| |||||||| || | |||| |||||||| | || ||| || || || || Sbjct 22088127 GGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCC 22088185 Query 66422 AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGT 66481 ||||| ||||| | || |||||||| |||||||| ||||| || | || | | Sbjct 22088186 AGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTT 22088245 Query 66482 TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACG 66541 ||| || || || || || |||||||| ||||||| | || | |||||| || || Sbjct 22088246 TTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGGCACC 22088305 Query 66542 AGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGA 66601 |||||||| || || |||||||| || ||||| | || || | ||| | Sbjct 22088306 AGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCGGTTGATCTGATACAGCTG 22088365 Query 66602 ACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC----CACTGT 66657 || || ||||| || ||||| | || || ||| ||||| | || | ||| Sbjct 22088366 ACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACA--CTGCTTAAGAGTGT 22088423 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGT 66715 | | ||||| || ||| ||| | || |||| |||||| |||| || || || Sbjct 22088424 C--ATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGAC--AGC 22088479 Query 66716 TGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA 66775 || || | || | || ||||||||| |||| ||||| || || | | Sbjct 22088480 TGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAACCACTTCTCT 22088539 Query 66776 GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-C 66834 |||| ||||||||||| ||| | ||||| |||| | |||| ||||| | | | Sbjct 22088540 GACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTCATGGATCCCAACAGAC 22088599 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGT 66893 || | ||| || | || || || || ||| ||| | ||| ||||| | || | | Sbjct 22088600 AC-CCTCATGAGCATGTGCTGCGGACGCTCGGCCA-CTTTTCCATTGATCTTCAGCAGAT 22088657 Query 66894 AGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 ||||||| |||||||| |||| || ||| | |||| |||||| Sbjct 22088658 AGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATC 22088703 >seq4 Length=75030901 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||||||||| ||| | || || | ||||||||||| ||||||| Sbjct 61476301 TGGAGCGCTTCACACAGGAGGTGCAGGTGACAGAAGCCAGATGTTTCTACGGTTTCCAGA 61476242 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| || ||||||| || Sbjct 61476241 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 61476182 Query 61376 AGC 61378 ||| Sbjct 61476181 AGC 61476179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| || || | | || || | || |||||||| ||||||| Sbjct 61465621 TGGAGCGCTTCACTCAGGAAGTACAGATACCAGAAGCCAGATGCTTCTACGGTTTCCAGA 61465680 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| | ||||| ||||||||||| | || ||||| || ||||||| || Sbjct 61465681 TCGCCATGGAGAACATTCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 61465740 Query 61376 AGC 61378 ||| Sbjct 61465741 AGC 61465743 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 61037 TGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCA 61096 || ||||||| || || |||||||| | ||||||||| | || |||| || |||| | Sbjct 61476684 TGAAAGAGAACCCACGGCGTTTCGTCATCTTCCCCATCCAATACCAGGACATCTGGCAGA 61476625 Query 61097 TGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 |||| || ||||| || |||||||||||||| | |||||||| Sbjct 61476624 TGTATAAGAAGGCCGAGGCTTCCTTCTGGACAGCAGAGGAGGT 61476582 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| ||||| | || ||||| | || ||| || || ||||| || ||||| | Sbjct 61475899 TGGTGGCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTTGCTGCCATCTTCT 61475840 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611 || ||||||| | || || ||||||||||||||||||||||| ||| | || | || | Sbjct 61475839 GGCTGAAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCA-GA 61475781 Query 61612 GACGAGG 61618 ||||||| Sbjct 61475780 GACGAGG 61475774 >seq11 Length=48234189 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| ||||| || Sbjct 16878774 GTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGG 16878715 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | ||||||||| || ||||| || || Sbjct 16878714 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCCGGTTTCTGTCTGC 16878655 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| ||||| |||| ||| || | ||||||||| Sbjct 16878654 GACTCGATGATAGCGTACCACAGCTGCTGAGCCTTCACC 16878616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539426912080