Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notothenia_20coriiceps_20[refseq_20GCF_5F000735185.1_202014-07-29] 38,657 sequences; 636,613,682 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq17963 149 3e-33 seq19095 138 5e-30 seq339 109 2e-21 >seq17963 Length=1310 Score = 149 bits (164), Expect = 3e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 781 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 722 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 721 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 667 >seq19095 Length=3210 Score = 138 bits (152), Expect = 5e-30 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| |||||||||||||||||||||||||||| ||| ||||| ||| |||||||||| Sbjct 973 GTTGAGACCCGAAAGATGGTGAACTATGCCTGAGTAGAATGAAGTCAGGGGAAACTCTGA 1032 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| ||| ||||||| || |||||||||| |||| || |||||||||||||||| Sbjct 1033 TGAAGGTTCGTAGCGGTTTTGACGTGCAAATCAATCGCTTAACTTGGGTATAGGGGCGA 1091 Score = 93.3 bits (102), Expect = 2e-16 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||| || ||| ||| || ||||| || || ||| | || ||| | | | || |||||| Sbjct 310 AGTAGAATTGCTTGAGATTGCAGTTCGAAGATGTGTGGCAAACTCCATACAAGTCTAAAT 369 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| ||||||||||| ||||||| | || ||||| ||||||||||| || || Sbjct 370 AATGGCGCGAGACCGATAGAAAACAAGTACCGCGAGGGAAAGTTGAAAAGCACTCTGAAA 429 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| | ||| ||||||| Sbjct 430 AGAGAGTTCACAAGTGCGTGAAA 452 >seq339 Length=25051429 Score = 109 bits (120), Expect = 2e-21 Identities = 84/99 (85%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||| ||| ||||| ||| |||||||||| ||||||||| Sbjct 6561203 GGACCCGAAAGATGGTGAACTATGACTGGGTAGGGCGAATCCAGAGGAAATTCTGGTGGA 6561144 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||| || |||||| ||| ||||| |||| ||||||| Sbjct 6561143 GGCCCGTAGCGGTCCTGATGTGCAGATCG---GTCAAAT 6561108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079170807350