Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notothenia_20coriiceps_20[refseq_20GCF_5F000735185.1_202014-07-29] 38,657 sequences; 636,613,682 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq29946 246 5e-63 seq26422 246 5e-63 seq19001 197 2e-48 seq21582 145 1e-32 >seq29946 Length=2699 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 446 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 388 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 387 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 329 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 328 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 269 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 268 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 209 Query 253 TCTGTC 258 |||||| Sbjct 208 TCTGTC 203 >seq26422 Length=1426202 Score = 246 bits (272), Expect = 5e-63 Identities = 204/246 (83%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 927580 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 927522 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 927521 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 927463 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | |||||||||||||||||||||||||||||||||| Sbjct 927462 GCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 927403 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 927402 GCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 927343 Query 253 TCTGTC 258 |||||| Sbjct 927342 TCTGTC 927337 >seq19001 Length=2050969 Score = 197 bits (218), Expect = 2e-48 Identities = 174/214 (81%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 1429985 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1430043 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | | Sbjct 1430044 AATCT-CGTGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCACGGG 1430102 Query 136 ATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | | ||| |||||| | |||||||||||||||| ||||||||||||||||| Sbjct 1430103 ACCGCGTAACTAATTAGCATGCCGGAGTCTCGTTCGTTATCGTAATTAACCAGACAAATC 1430162 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 ||||||||||||||||||||||||||||||||| Sbjct 1430163 GCTCCACCAACTAAGAACGGCCATGCACCACCAC 1430196 >seq21582 Length=1143 Score = 145 bits (160), Expect = 1e-32 Identities = 99/109 (91%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 ||| || |||||||||||||||||||| |||||||||||||||| ||||||||| |||| Sbjct 3 AGGCTAGAGTCTCGTTCGTTATCGGAATAAACCAGACAAATCACTTCACCAACTACGAAC 62 Query 211 GGCCATGCACCACCACCCA-TAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| ||| |||||||||||||| |||| ||||| Sbjct 63 GGCCATGCACCACCACCCACTAG-ATCAAGAAAGAGCTTTCAACCTGTC 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796501606617