Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notothenia_20coriiceps_20[refseq_20GCF_5F000735185.1_202014-07-29] 38,657 sequences; 636,613,682 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq19095 271 1e-70 seq33386 127 3e-27 seq36215 114 2e-23 seq3546 80.6 5e-13 >seq19095 Length=3210 Score = 271 bits (300), Expect = 1e-70 Identities = 197/226 (87%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 |||||||||||||||||||||||||| ||||||||||||||||||| | || |||||| Sbjct 3210 CTAAACCCAGCTCACGTTCCCTATTAATGGGTGAACAATCCAACGCGTTGAGAGTTCTGC 3151 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 || |||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 3150 CTCTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGACCGCT 3091 Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTT 247 |||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||| | Sbjct 3090 TGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTTCAAA-CT 3032 Query 248 CGAGGGACT--AAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 | ||| ||||||||||||||||| |||||||| || | ||| Sbjct 3031 CATAAAACTCAAAAGGATCGATAGGCCAGACTTTCATCGTCTATAT 2986 >seq33386 Length=92542 Score = 127 bits (140), Expect = 3e-27 Identities = 99/117 (85%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||| ||||||||||||||||| |||| | | |||||||||| Sbjct 49167 GTCATCAGTAGGGTAAAACGTACCTGTCTCATGACGGTTCAAACACGACCCACGTTCCCT 49226 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||||| ||||||||||||||| |||| ||| |||||||| | ||||||||||| Sbjct 49227 ATTAGCGGGTGAACAATCCAAAGCTTGGTGAA-TCTGCTTCACAACGATAGGAAGAG 49282 >seq36215 Length=14287 Score = 114 bits (126), Expect = 2e-23 Identities = 65/66 (98%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4470 AAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 4411 Query 104 AATCCA 109 |||||| Sbjct 4410 AATCCA 4405 >seq3546 Length=65242 Score = 80.6 bits (88), Expect = 5e-13 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||||||||||||||||||||||||||| |||||| || | ||| | Sbjct 27582 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAA 27641 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | |||||||| ||| | |||||| ||| |||||||| Sbjct 27642 GTCAGAAGGATCGTGGAGCCCCGCTTTCACGGTCTGTATTCA 27683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854069714592