Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notothenia_20coriiceps_20[refseq_20GCF_5F000735185.1_202014-07-29] 38,657 sequences; 636,613,682 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq19095 379 7e-103 seq3546 104 8e-20 >seq19095 Length=3210 Score = 379 bits (420), Expect = 7e-103 Identities = 413/542 (76%), Gaps = 26/542 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||||||||| |||| | |||| | |||||||||||| Sbjct 2950 CTTTTACTCTACGCGAGGCTTCTGTTCTCGCTGAGATCACCTTTGAACACCTGCGTTAGA 2891 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| ||||||||| | | | || ||| |||| | | Sbjct 2890 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCAATCGGTCATTGTTCTCAAATAGTACT 2831 Query 127 GGCC-CGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGA---AGACCAGTTCCGCT--- 179 | | ||| | |||||| | |||| | | ||| | | || ||| Sbjct 2830 GTTCTCGCTCA----CTTAAC-CGAGAATAACATTTATGACAAATAGCAAAATTGCTAAC 2776 Query 180 ----TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 |||| || ||||| || ||| | | | ||||||||||||| | | ||| | Sbjct 2775 AAAATCATCGAGTAAGTCAAGTAACAACGAAAGCAGTGGTATTTCACA-GATCTCAAAAG 2717 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||| ||| ||||| | ||| || ||||||| | | ||||||||||||||||| Sbjct 2716 --TCCCACGTATCCTACATCCTTCATGTTTCTTCACAACGACTGACTAGAGTCAAGCTCA 2659 Query 296 ACAGGGTCTTCTTTCCCCGCTG----ATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct 2658 ACAGGGTCTTCTTTCCCCGCCGTCTAATTCC---AAGCCCGTTCCCTTGGCTGTGGTTTC 2602 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||| | | ||| |||||||||||||||||| || |||||||||||||||||||||||| Sbjct 2601 GCTGGGCTGCAGACAGGGACAGTGGGAATCTCATTGATCCATTCATGCGCGTCACTAATT 2542 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 ||||||||||||||||||||||| || | ||||||||||||| | |||||||||||||| Sbjct 2541 AGATGACGAGGCATTTGGCTACCGCAAAAAAGTCATAGTTACTTCTGCCGTTTACCCGCG 2482 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||| | ||||| ||| || |||||| |||||||||||||||||||||||||||||| Sbjct 2481 CTTGTTCAGATTTCGCCACGTTAACATTCTGAGCACTGGGCAGAAATCACATTGCGTCAA 2422 Query 532 CA 533 || Sbjct 2421 CA 2420 >seq3546 Length=65242 Score = 104 bits (114), Expect = 8e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | |||||||||||||| |||| Sbjct 27716 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGTGTTACC 27775 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| |||| ||| |||||| || ||||||||||||||| || Sbjct 27776 GTTTGACAGGTGTACCGCCCAAGTCAAACTCCCCACCTGCCA 27817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634567880736