Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notothenia_20coriiceps_20[refseq_20GCF_5F000735185.1_202014-07-29] 38,657 sequences; 636,613,682 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq21582 192 2e-46 seq22018 145 2e-32 seq23272 91.5 4e-16 seq22123 91.5 4e-16 seq13414 82.4 2e-13 >seq21582 Length=1143 Score = 192 bits (212), Expect = 2e-46 Identities = 208/268 (78%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||| ||||| | | || || || | | | ||| ||||| | |||||||||| Sbjct 823 GTTCTCATTTCAATTGCCGAATCCTAA-GATCGCGGCATCGCTATTTCTCGTCACTACCT 881 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| ||||||||||||||| |||||||||||||||||||||||||| |||| || Sbjct 882 CCCCGATCAGGGATTGGGTAATTTTCGCGCCTGCTGCCTTCCTTGGATGTGACAGCCATT 941 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| |||| |||||||||||| |||||| ||||||||||||||||| ||| ||| | Sbjct 942 TCTCATGCTCTCTCTCCGGAATCAAACCCTGATTCCCCGTTACCCGTTACAACCTTGGCA 1001 Query 181 G-GCCACTATCCTACCATCGAAAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCCGG 238 | || || || ||||| |||||||||||| |||| | || ||| || | || || Sbjct 1002 GTAACATTA-ACTGCCATCAAAAGTTGATAGGTCAGACACTTCCAATCAA-CGTCACCCA 1059 Query 239 CTCAA-GGCCATGCGATTCGTTAAGTTA 265 ||||| ||| ||| || ||||| ||| Sbjct 1060 CTCAATGGCGGTGCAATCTGTTAATTTA 1087 >seq22018 Length=1044045 Score = 145 bits (160), Expect = 2e-32 Identities = 134/166 (81%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAA 398 || ||||||||||||||||||||| |||| ||| || | ||| || || | |||||| Sbjct 428535 TTGGCATGTATTAGCTCTAGAATTGCCACAGTTCTCAAAGTAACGTTAGAG-CGATCAAA 428477 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| |||| ||||| |||||||||||||||||||| ||||| | | | |||||| Sbjct 428476 GGAACCATAAGTGATTCAATGAGCCATTCGCAGTTTCGCTGTACCGGGCGTGTGTACTTA 428417 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | | ||||| ||||||||||||||||||||||||| ||| |||||| Sbjct 428416 GTCTTGCATAGCTTAATCTTTGAGACAAGCATATG-CTAGTGGCAG 428372 >seq23272 Length=178180 Score = 91.5 bits (100), Expect = 4e-16 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | | ||||||||| ||||||||||||||||||||||||| Sbjct 18442 GCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTTGCATGGCTTAATCTTTGAGACAAG 18501 Query 488 CATATGACTACTGGCAG 504 |||||| |||||||||| Sbjct 18502 CATATG-CTACTGGCAG 18517 >seq22123 Length=274426 Score = 91.5 bits (100), Expect = 4e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||| ||||||||||||| |||| ||||||||||||| | |||| | | ||| Sbjct 266955 AACCATAACCGATTTAATGAGCCCTTCGAAGTTTCACTGTATTGTCCGCTTGTTCCAAGA 266896 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCAT 490 | | ||||||||||| ||||||| |||||| Sbjct 266895 CTTTCATGGCTTAATGTTTGAGATAAGCAT 266866 >seq13414 Length=2074 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||| | | | ||||||||| ||| ||||||||||||||||||||| Sbjct 1895 GCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTTGCGTGGCTTAATCTTTGAGACAAG 1954 Query 488 CATATGACTACTGGCAG 504 |||||| ||||||| || Sbjct 1955 CATATG-CTACTGGGAG 1970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509816124672