Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq460 163 4e-38 seq5012 161 1e-37 seq48 159 5e-37 seq2 132 7e-29 seq4 91.5 2e-16 seq10 86.0 9e-15 seq11 84.2 3e-14 >seq460 Length=45657 Score = 163 bits (180), Expect = 4e-38 Identities = 182/235 (77%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| |||||||| || ||||||||||||| ||||| |||| ||||| |||||| | Sbjct 9752 GTACAAAGTGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGRTTACTGGGAATT-C 9809 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 9810 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 9869 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 || | ||| ||||| |||| | | || || ||| | || ||||||| |||||||||| Sbjct 9870 ACTCACGCCTCTCGGCGAAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGCGCGTGC 9928 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 9929 AGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 9982 >seq5012 Length=149044 Score = 161 bits (178), Expect = 1e-37 Identities = 180/234 (77%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| ||| || | Sbjct 107858 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGACTT-C 107801 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | |||||||||||| | ||||| ||||||| |||| | || Sbjct 107800 CTCGTTCATGGGAAACAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 107741 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| || || |||| | | || || ||| ||||||| |||||||||| Sbjct 107740 ACCCACGCCTCTCTGCGAAGGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 107681 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| || ||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 107680 GCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 107629 >seq48 Length=1039201 Score = 159 bits (176), Expect = 5e-37 Identities = 181/234 (77%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||||||| | ||||| |||||||||| |||||| | Sbjct 655780 GTACAAAGGGCAGGGACTTAATCAACGCGAGTT--ATGAC-CGCGCTTACTGGGAATT-C 655725 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 655724 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 655665 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| ||||| || ||| ||||||| |||||||||| Sbjct 655664 ACCCACGCCTCTCGGCGAAGGG--TAGACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 655607 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| || ||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 655606 GCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 655555 >seq2 Length=74323923 Score = 132 bits (146), Expect = 7e-29 Identities = 173/234 (74%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| ||| || ||||| |||||| |||||| | Sbjct 27289389 GTACAAAGGGCAGGGACTTAATCAACCAGAGTTT-ATGACCCGCGCTG----GGAATT-C 27289336 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | |||| ||||||| |||| | || Sbjct 27289335 CTCGTTCATGGGAAAAAATTGCAATCCCCAATCCATATCACGAGTGGGGTTCAGCGGGTT 27289276 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| || | || || ||| | ||||| ||||| |||| Sbjct 27289275 ACCCACGCCTCTCGGCGAAGGGGAGACACACGCTGATCCGCTGAGTGTGGCGCGTGTGCA 27289216 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 27289215 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 27289163 >seq4 Length=79859423 Score = 91.5 bits (100), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 36 ATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCC 95 |||| |||||||||| |||||| ||| ||| | || ||||||| | | ||||| Sbjct 17911779 ATGATCCGCGCTTACTGGGAATT-CCTTGTTCCTGGGAAATAATTGCATTCCCCAATCCC 17911837 Query 96 CATCACGA-TGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTG 154 |||| || || || | |||||| ||| ||||| |||| ||| || || Sbjct 17911838 TATCATGAGTGGGGTTCGGCGGGTTACCCATGCCTCTCGGCAAAGGGTATACACATAGTG 17911897 Query 155 AATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 | | ||||| || ||||||| |||| | |||||||||||||||||||||||||||| Sbjct 17911898 ATCTGCTGAGTGTGGCTCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTAT 17911957 Query 215 TGCCTCAAACTTCCGTGGC 233 || ||||| || ||||| Sbjct 17911958 TG-CTCAATCTCGTGTGGC 17911975 >seq10 Length=65230829 Score = 86.0 bits (94), Expect = 9e-15 Identities = 60/66 (91%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| Sbjct 56901725 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 56901668 Query 61 CTCGTT 66 |||||| Sbjct 56901667 CTCGTT 56901662 >seq11 Length=79463822 Score = 84.2 bits (92), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 4/72 (6%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||| Sbjct 40041848 TCAGTGTGGCGCGCGTGCAGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTC 40041905 Query 221 AAACTTCCGTGG 232 || | |||||| Sbjct 40041906 AA--TCCCGTGG 40041915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751845215605