Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq460 104 1e-20 seq48 104 1e-20 seq2 95.1 7e-18 seq5012 84.2 1e-14 >seq460 Length=45657 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 10282 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 10341 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 10342 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 10398 >seq48 Length=1039201 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 655258 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 655199 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 655198 GATCGCTAGTTGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 655142 >seq2 Length=74323923 Score = 95.1 bits (104), Expect = 7e-18 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | |||| ||| |||| ||||| |||| Sbjct 27288866 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCCGGCGTGTCATGGGAATAACGCCGCCG 27288807 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| ||||| ||||| ||||| ||| |||||||||| |||||||||||||| Sbjct 27288806 GATCACTAGTTGGCATCGTTTATGGTCGGAACTACGACGGCATCTGATCGTCTTC 27288752 >seq5012 Length=149044 Score = 84.2 bits (92), Expect = 1e-14 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || | | ||||| ||| | || | ||| |||| Sbjct 107330 GAACCCAAAGACTTTGGTTTCCCGGACGCTGCCG-GCGGGACATGGGAAAAACGCCGCCG 107272 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATC-TGATCGTCTTCGA 117 |||| ||||| ||||| |||| ||| |||||||||||||| ||||||||||||| Sbjct 107271 GATCGCTAGTTGGCATCATTTATGGTCGGAACTACGACGGTATCTTGATCGTCTTCGA 107214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278344545330