Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq19 122 2e-25 seq3 105 1e-20 seq3970 77.0 6e-12 >seq19 Length=54998362 Score = 122 bits (134), Expect = 2e-25 Identities = 182/252 (72%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATG 131 || |||||||||| ||| | ||||||||| ||||| | || |||||| | ||| | Sbjct 44846173 TTGACTTTGAAAACATTTG--TGTTCAAAGTAGGCCCGGTCACTTGAATACCTCAGCTAG 44846230 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTA----GGACCGCCGTAAT 187 || |||| ||||||||| | ||||||||||||| ||||| | | || | | || Sbjct 44846231 GATTAATGGAATAGGACTTT-GGTTCTATTTTGTGGGTTTTTCTTCTGAACTGGGGCCAT 44846289 Query 188 GATTAATAGGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||| ||||| | |||||| | ||||| | |||||||||||||||||| Sbjct 44846290 GATTAAGAGGGACGGACGGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGAC 44846349 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 | ||||| || | | |||||| || ||||| |||||||||||||||| |||| Sbjct 44846350 CGGTGCAAGACGGACAAAAGTGAAAGCTTTTGCCAAGAATGTTTTCATTAATCA-AGAAC 44846408 Query 307 GAAAGTTAGGGG 318 |||||||| || Sbjct 44846409 AAAAGTTAGCGG 44846420 >seq3 Length=70097442 Score = 105 bits (116), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | ||||||||| |||||||||||||| Sbjct 10442595 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGGAAAAATTAGAGTGT 10442654 Query 98 TCAAAGCAGGCC--TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| ||||||| ||||||||| | ||| Sbjct 10442655 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAACGGAATAGGAC-TCTGGT 10442713 Query 156 TCTATTTTGTTGGTTT 171 |||||||||| ||||| Sbjct 10442714 TCTATTTTGTGGGTTT 10442729 >seq3970 Length=104531 Score = 77.0 bits (84), Expect = 6e-12 Identities = 121/171 (71%), Gaps = 11/171 (6%) Strand=Plus/Minus Query 137 ATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTA----GGACCGCCGTAATGATTA 192 || ||||||||| | |||||||||||||| |||| | | || | | ||||||| Sbjct 15941 ATGGAATAGGAC-TCCGGTTCTATTTTGTGKGTTTTTCTTCTGAACTGGGGCCATGATTA 15883 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTA 249 | ||||| | |||||| | ||||| || || ||||||||||||||||| Sbjct 15882 AGAGGGACGGCCGGGGGCATTCGTATTG---TGCCACTAGAGGTGAAATTCTTGGACCGG 15826 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| || | |||||||| || ||||| |||||||||| ||||| Sbjct 15825 CGCAAGACGGACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATGAATCA 15775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915005547456