Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq48 145 3e-32 seq30 145 3e-32 seq3094 136 2e-29 seq460 136 2e-29 seq11 136 2e-29 seq28 131 7e-28 seq5012 129 2e-27 seq4218 122 4e-25 seq29 104 1e-19 seq7 100 1e-18 seq17 98.7 4e-18 seq2219 96.9 1e-17 seq22 93.3 2e-16 seq14 84.2 9e-14 >seq48 Length=1039201 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 658104 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 658163 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 658164 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 658218 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 657315 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 657374 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 657375 ACCGGCACGAGACCGATAGACGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 657434 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 657435 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 657474 >seq30 Length=42261227 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| Sbjct 4735361 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCAGGTGGA 4735420 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| || ||||||||||||||| Sbjct 4735421 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCAACCTGGGTATAGGGGCGA 4735475 Score = 86.0 bits (94), Expect = 3e-14 Identities = 88/108 (81%), Gaps = 8/108 (7%) Strand=Plus/Minus Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC-GC 635 |||||||||||||||||||| |||| ||||||||| || |||||||||| || | Sbjct 13165173 AAGATGGTGAACTATGCCTGGC-AGGGC-AAGCCAGAG---AC-CTGGTGGAGGTTCCGT 13165120 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||| ||||||||||| ||||| | | ||||||||||||| Sbjct 13165119 AGCGGTCCTGACGTGCAAATCGGTCGTCCGACCT-GGTATAGGGGCGA 13165073 >seq3094 Length=457514 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| Sbjct 40061 GGACCCGAAAGATGGTGAACTATACCTGGGCGGGGCGAAGCCAGAGGAAACTCTGGTGGA 40120 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 40121 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 40175 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 39340 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 39399 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 39400 ACCGGCACGAGACCGATAGACGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 39459 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 39460 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 39499 >seq460 Length=45657 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 8268 GGACCCGAAATATGGTAAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 8209 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 8208 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 8154 Score = 84.2 bits (92), Expect = 9e-14 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 59 TGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAG 118 ||||| | || ||| |||||| | | ||||| |||||||| ||| ||||||||||| Sbjct 8993 TGCAGGACAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAG 8934 Query 119 CGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGT 178 ||||||| || | | | | |||||| ||||| | |||||||| || || ||| Sbjct 8933 ACGACAAGTACCGTAAGGGCATGTTGAAAATATCTTTGAAGAGAGAGTTCAAGAGGGCGT 8874 Query 179 GAAATTGTTGAAAGGGAAGCG 199 |||| ||||| |||||| || Sbjct 8873 GAAACCGTTGAGAGGGAAACG 8853 >seq11 Length=79463822 Score = 136 bits (150), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 63279857 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 63279798 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | |||||||||||| || Sbjct 63279797 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGTGA 63279743 Score = 118 bits (130), Expect = 4e-24 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 63280445 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 63280504 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||| | ||||||| || | ||||| ||||||| |||||| | Sbjct 63280505 ACCGGCACGAGACCGATCGACGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 63280564 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 |||||||| || || ||||||| ||||| Sbjct 63280565 AGAGAGTTCAAGAGGGCGTGAAACCGTTGA 63280594 Score = 87.8 bits (96), Expect = 7e-15 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTA 96 || |||||| |||||||||||||||||| | || || ||||| | | ||| | ||| Sbjct 72100834 GAGGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGATTGTAAACTCCATCTCAGACTA 72100893 Query 97 AATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| ||| |||||||||| | ||||| || | ||||| |||||| |||||| Sbjct 72100894 AATACCGGCATAAGACCGATAGTCGATAAGTACCGTAAGGGAAAGTTGAAAATAACTTTG 72100953 Query 157 GAAAGAGAGTTAAAAAGC 174 | |||||||| || ||| Sbjct 72100954 AAGAGAGAGTTCAAGAGC 72100971 >seq28 Length=47366153 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||| | ||||||||||| |||||||||| |||||||||||||||||| Sbjct 11611888 GGACCCGAAAGATGTTTAACTATGCCTGGGCAGGGTGAAGCTAGAGGAAACTCTGGTGGA 11611947 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 11611948 GGTCTGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 11612002 Score = 129 bits (142), Expect = 2e-27 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 |||||||||||||||||||||||| |||| | |||||||||||||||||||||||| Sbjct 2810914 CCGAAAGATGGTGAACTATGCCTGGGCAGGGCGTAGCCAGAGGAAACTCTGGTGGAGGTC 2810973 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||| ||| ||||||||||| || || | ||||||||||||||| Sbjct 2810974 CGTAGCGGTCCTGACGTGCAAATCGGTCATCCGACCTGGGTATAGGGGCGA 2811024 Score = 104 bits (114), Expect = 1e-19 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||||||||||| |||| |||||||||||||||||||||||||| | ||| ||| | Sbjct 39460815 TGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCACAGTGGTCC 39460874 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||| |||| ||| | | ||||||||||||||| Sbjct 39460875 TGACGTGCACATCGGTCGACCGACCTGGGTATAGGGGCGA 39460914 >seq5012 Length=149044 Score = 129 bits (142), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || |||| |||||| | | ||||| |||||| Sbjct 107943 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGRCTAAAT 108002 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 108003 ACCGGCACGAGACCGATAGACGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 108062 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||||| ||| || || Sbjct 108063 AGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTAAACG 108102 >seq4218 Length=247552 Score = 122 bits (134), Expect = 4e-25 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| Sbjct 65499 GGACCCGAAAGATGGTGTACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 65440 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || ||| | ||| ||||||||||| || || | |||||||||| |||| Sbjct 65439 GGTCCGTAGCATTCCTGACGTGCAAATCGGTCATCCGACCTGGGTATAGGAGCGA 65385 >seq29 Length=38425108 Score = 104 bits (114), Expect = 1e-19 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||| | ||||||||||||||||| |||| |||||||||||| |||||| |||| | Sbjct 697788 ACCCGAGATATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGACACTCTGTTGGAAG 697729 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || ||| || ||| |||||||||| ||||| | |||||||||||| Sbjct 697728 TCCGTAGCAGTCCTGAAGTGCAAATCGGTCGTCCGACCTGGGTATAGGGG 697679 >seq7 Length=50431327 Score = 100 bits (110), Expect = 1e-18 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 45 GAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGG 104 ||| || ||||||||||||| | || || |||||| | | ||||| |||||||| || Sbjct 50336558 GAGATGCTTGGGAATGCAGCCCAAAGCAGGTGGTAAACTCCATCTAAGGCTAAATACCGG 50336499 Query 105 CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164 | |||||||| || ||||||| || | ||| | ||||||| |||||| | ||||| Sbjct 50336498 CACGAGACCGACAGTCGACAAGTACCGTAAGGGAATGTTGAAAAGAACTTTGAAGAGAGA 50336439 Query 165 GTTAAAAAGCACGTGAAATTGTTGA 189 ||| || || ||||||| ||||| Sbjct 50336438 GTTCAAGAGGGCGTGAAACCGTTGA 50336414 >seq17 Length=75567179 Score = 98.7 bits (108), Expect = 4e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 38596521 GGACCCGAAAGCTGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGG 38596580 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAAT 655 || || ||| || ||| |||||| || Sbjct 38596581 GGTCCGTAGCAGTCCTGACGTGCATAT 38596607 >seq2219 Length=239748 Score = 96.9 bits (106), Expect = 1e-17 Identities = 88/106 (83%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 575 GAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCG 634 |||||||||||| ||||||||| |||| ||||| |||||| ||||||||||||| ||| Sbjct 17114 GAAAGATGGTGA-CTATGCCTGGGCAGGGCGAAGC-AGAGGAGACTCTGGTGGAGG-TCG 17170 Query 635 CAGCGGTTCTGGCGTGCAAATCGATCG-TCAAATTTGGGTATAGGG 679 |||||| ||| |||| |||||| ||| || | ||||||||||| Sbjct 17171 TAGCGGTCCTGACGTGAAAATCGGTCGTTCGGACCTGGGTATAGGG 17216 >seq22 Length=55596650 Score = 93.3 bits (102), Expect = 2e-16 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || || |||||| | | ||||| ||||||| Sbjct 35367973 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCTGGTGGTAAACTCCATCTAAGGCTAAAT 35367914 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| ||||||| || | ||||| | |||| |||||| | Sbjct 35367913 ACCGGCACGAGACAGATAGACGACAAGTACCGTAAGGGAAAGTTTAAAATAACTTTGAAG 35367854 Query 160 AGAGAGTTAAAAAG 173 ||||||| ||||| Sbjct 35367853 TGAGAGTTCAAAAG 35367840 >seq14 Length=71386482 Score = 84.2 bits (92), Expect = 9e-14 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 48 TTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA 107 ||||||||||||||||| | || | | |||||| | | ||||| |||||||| ||| Sbjct 52855904 TTGTTTGGGAATGCAGCCCAAAGCGTGTGGTAAACTCCATCTAAGGCTAAATACCGGCAC 52855845 Query 108 GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||||||||| ||||||| ||| | ||||| |||||| |||||| Sbjct 52855844 AAGACCGATAGTCGACAAGTACAGTAAGGGAAAGTTGAAAATAACTTTG 52855796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079544251850