Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq22 116 2e-24 seq48 109 3e-22 seq17 104 1e-20 seq2 78.8 4e-13 >seq22 Length=55596650 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct 523773 GGAAAATAAACTAACCGGGATTCCCTCAGTAGCGGCGAGTGAAGAGGGAAGAGCCCAGCG 523714 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||| | || | || |||| |||| |||||| ||| Sbjct 523713 CCAAATCCCTGTCCGTCCGTCGGGCACGGGGAATGTGGTGTA 523672 >seq48 Length=1039201 Score = 109 bits (120), Expect = 3e-22 Identities = 86/102 (84%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||| |||||||||| ||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 657098 GGAAGAGAAACTAACAAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 657157 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || ||| |||| ||||| |||||| ||| Sbjct 657158 CCGAATCCCTGTCCGTCGG-CGGGCACGGGAAATGTGGTGTA 657198 >seq17 Length=75567179 Score = 104 bits (114), Expect = 1e-20 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 8 AAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATC 67 |||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||| Sbjct 38595739 AAACTAACCAGGATTCCCTCAGTAGCGGTGAGCGAAGAGGGAAGAGCCCAGCGCCGAATC 38595798 Query 68 CCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||| | | | || |||||| |||||||||| Sbjct 38595799 CCCTTCTGTCCGGTGGTTGCGGGAAATGTGGCGTA 38595833 >seq2 Length=74323923 Score = 78.8 bits (86), Expect = 4e-13 Identities = 75/97 (77%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| |||||||||||||||||||||||| | ||| ||||||||||||| | Sbjct 27290551 GGAAAATAAACTAACCAGGATTCCCTCAGTAGCAGCG-------GGGGAAGAGCCCAGTG 27290603 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 |||||||| || || | | |||||||| ||||| Sbjct 27290604 CCGAATCCTCGTCCATCCGGCATGCGCGGGAAATGTG 27290640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230354106480