Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq460 248 1e-63 seq48 246 5e-63 seq5012 237 3e-60 seq2 170 3e-40 seq23 123 4e-26 seq8639 111 3e-22 seq4 98.7 2e-18 seq11 82.4 1e-13 >seq460 Length=45657 Score = 248 bits (274), Expect = 1e-63 Identities = 206/248 (83%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 9911 TCAGTGTGGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 9969 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | ||||| || ||| Sbjct 9970 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCACCCGC--TCG 10026 Query 136 ATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | || || |||||| | |||||||||||||||||||||||||||||||| Sbjct 10027 GGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 10086 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 10087 TCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATC 10146 Query 251 AATCTGTC 258 |||||||| Sbjct 10147 AATCTGTC 10154 >seq48 Length=1039201 Score = 246 bits (272), Expect = 5e-63 Identities = 210/253 (83%), Gaps = 11/253 (4%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| || |||||||||||||||||||||||||||| Sbjct 655630 TCCGCTCAGTGTGGCGCGCGTGCAGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATT 655572 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | |||| ||| Sbjct 655571 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCGACCGC 655514 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 655513 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 655456 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 655455 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAG 655396 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 655395 CTATCAATCTGTC 655383 >seq5012 Length=149044 Score = 237 bits (262), Expect = 3e-60 Identities = 208/253 (82%), Gaps = 11/253 (4%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| || |||||||||||||||||||||||||||| Sbjct 107704 TCCGCTCAGTGTGGCGCGCGTGCAGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATT 107646 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | |||| ||| Sbjct 107645 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCGACCGC 107588 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 107587 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 107530 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||| |||| |||||| |||||||| Sbjct 107529 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACACCCCACAGAATCGAGAAAGAG 107470 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 107469 CTATCAATCTGTC 107457 >seq2 Length=74323923 Score = 170 bits (188), Expect = 3e-40 Identities = 191/249 (77%), Gaps = 16/249 (6%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||| ||||| |||| |||| | ||||||||||||||||||||||||||||||| |||| Sbjct 27289232 AGTGTGGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCAA 27289174 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT 137 || | |||||| | | || | || |||| ||| || | | || ||| || | Sbjct 27289173 TCT-CGTGTGGCTGAACGTCACTTGTTCCTCGAAGGAGTTGGACGCCGACCGC--TC--T 27289119 Query 138 GGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 ||| | || |||||| | ||||||||||||||| | || ||||||||||| Sbjct 27289118 GGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCAGGATGAACCAGACAAA 27289059 Query 191 T-CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 | | ||||| ||||||||||| |||||||||||||||||| |||||| |||| |||||| Sbjct 27289058 TGCGCTCCAACAACTAAGAACAGCCATGCACCACCACCCACAGAATCGAGAA--AGCTAT 27289001 Query 250 CAATCTGTC 258 |||||||| Sbjct 27289000 TAATCTGTC 27288992 >seq23 Length=42348054 Score = 123 bits (136), Expect = 4e-26 Identities = 180/248 (73%), Gaps = 25/248 (10%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| || |||||||||||||||||||||| || Sbjct 20421121 TCAGTGTGGCGCGCGTGCAGCCC----CA------GGCATCACAGACCTGTTATTGC-TC 20421169 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA---TAG 132 || || | |||||| | || | | ||||| | |||||| | || ||| | | Sbjct 20421170 AATCT-CGTGTGGCTGAACGCTACTTGTCCCGCAAAGAAGTTGGATGCCGACCGCTCTGG 20421228 Query 133 TCG-ATGGGGCTATTTAGCAGGTTAAG-----GTCTCGTTCGTTATCGGAATTAACCAGA 186 || || | ||| || || ||| ||| || |||||| ||||||||| | | Sbjct 20421229 CCGCATAG--CTAGTTTAAAGTTTATTAAATTGTCAGGTCCGTTATTGGAATTAACAAAA 20421286 Query 187 CAAA--TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 |||| || ||||||||||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 20421287 CAAAAATCGCTCCACCAACTAAGAACGGTCATGCACCACCACCCACGGAATCGAGAAAGA 20421346 Query 245 GCTATCAA 252 ||| |||| Sbjct 20421347 GCTGTCAA 20421354 >seq8639 Length=23533 Score = 111 bits (122), Expect = 3e-22 Identities = 199/270 (74%), Gaps = 33/270 (12%) Strand=Plus/Plus Query 12 TCCGTC---AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG--CATCACAGACCTGT 66 |||||| ||||| |||||||||| |||| |||||||| || |||||||||| ||| Sbjct 18340 TCCGTCTCTAGTGTGGCGCGCGTGCAGCCCG--ACATCTAAAGGTGCATCACAGAC-TGT 18396 Query 67 TATTGC-CTCAAACTTCCAT--TG-GCTGGAA-GCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||| ||||| |||| | || ||| ||| |||| | || ||||||||| | | | Sbjct 18397 TATTTAGCTCAATCTTCGCTGCTGAGCTAGAACGCCACTTGTTCCTCTAAGA-GTTGGAC 18455 Query 122 ACCAACCATAGTCGATGGGGCTAT------TTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 || | || ||| |||| | || || ||| | |||||||||||| ||| Sbjct 18456 ACGACCC---GTCTCTGGGCCGATAACTAGTTGGCATGCCGGAGTCTCGTTCGTT-TCGA 18511 Query 176 AATTAAC--CA-GACAAAT--CACTCCACCAACTAAGAACGGCCATGCACCA-CCACCCA 229 |||||| || ||||||| | |||||| ||| |||||||||||||||||| ||||||| Sbjct 18512 GATTAACTCCACGACAAATTCCGCTCCACAAAC-AAGAACGGCCATGCACCACCCACCCA 18570 Query 230 TAGA-ATCAAGAAAGAGCTATCAATCTGTC 258 | | | | || |||||||||||||||||| Sbjct 18571 CAAAGAACGAG-AAGAGCTATCAATCTGTC 18599 >seq4 Length=79859423 Score = 98.7 bits (108), Expect = 2e-18 Identities = 82/98 (84%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||| || ||||||| |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 17911906 AGTGTGGCTCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 17911964 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | || |||||| | |||| | |||| ||||||||| Sbjct 17911965 TC-TCGTGTGGCTGAATGCCACTTGTCCATCTAAGAAG 17912001 >seq11 Length=79463822 Score = 82.4 bits (90), Expect = 1e-13 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| || ||||||||||||||||||||||||||||| ||| Sbjct 40041848 TCAGTGTGGCGCGCGTGCAGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTC 40041905 Query 76 AA 77 || Sbjct 40041906 AA 40041907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796635994407