Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq10 86.0 4e-15 seq48 78.8 6e-13 seq460 77.0 2e-12 seq29 77.0 2e-12 seq2 73.4 2e-11 >seq10 Length=65230829 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 56901765 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 56901708 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 56901707 TAAT-CAACGCGAGCT 56901693 >seq48 Length=1039201 Score = 78.8 bits (86), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 4/74 (5%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct 655819 CTCACTAAACCATC-CAT-CGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 655763 Query 109 TAATACAACGCAAG 122 |||| |||||| || Sbjct 655762 TAAT-CAACGCGAG 655750 >seq460 Length=45657 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||| |||||||| Sbjct 9712 CTCACTAAACCAGC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGTGCAGGGACT 9769 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 9770 TAAT-CAACGCGAGCT 9784 >seq29 Length=38425108 Score = 77.0 bits (84), Expect = 2e-12 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 698189 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 698246 Query 109 TAAT 112 |||| Sbjct 698247 TAAT 698250 >seq2 Length=74323923 Score = 73.4 bits (80), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||| | ||||||||||||||||||| Sbjct 27289429 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCTGTGTGTACAAAGGGCAGGGACT 27289372 Query 109 TAATACAAC 117 |||| |||| Sbjct 27289371 TAAT-CAAC 27289364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300740083460