Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq460 179 7e-43 seq48 176 9e-42 seq5012 172 1e-40 seq2 141 2e-31 seq4 111 3e-22 seq10 87.8 3e-15 seq11 82.4 1e-13 >seq460 Length=45657 Score = 179 bits (198), Expect = 7e-43 Identities = 197/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 10008 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 9951 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 9950 ATGCCCTTAGATGTCCAGGGCTGCACGCGCGCCACACTGAGTGGATCAGCGTGTGTCTAC 9891 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| || |||| | | || | | ||||| | ||||| | | |||| Sbjct 9890 CCTTCGCCGAGAGGCGTGAGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 9831 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || ||||| |||| ||||| ||| |||||||||| Sbjct 9830 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAYCGCGGGTCATAAGCTCGCGTTGATT 9771 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||| ||||||| Sbjct 9770 AAGTCCCTGCACTTTGTA 9753 >seq48 Length=1039201 Score = 176 bits (194), Expect = 9e-42 Identities = 199/258 (77%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 655529 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 655586 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | | Sbjct 655587 ATGCCCTTAGATGTCC-GGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTCTACC- 655644 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 655645 -CTTCGCCGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 655703 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| | | |||||||||| Sbjct 655704 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCG-GTCAT-AACTCGCGTTGATT 655761 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 655762 AAGTCCCTGCCCTTTGTA 655779 >seq5012 Length=149044 Score = 172 bits (190), Expect = 1e-40 Identities = 196/258 (76%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 107603 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 107660 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 107661 ATGCCCTTAGATGTCC-GGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 107719 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || | ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 107720 CCTTCGCAGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 107779 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | ||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 107780 CAATTGTTTCCCATGAACGAGGAAGTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 107839 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 107840 AAGTCCCTGCCCTTTGTA 107857 >seq2 Length=74323923 Score = 141 bits (156), Expect = 2e-31 Identities = 166/223 (74%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||| ||||| || Sbjct 27289171 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGCGCCAC 27289229 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||| | | || || || || |||| |||| ||| ||||||| | | || | Sbjct 27289230 ACTCAGCGGATCAGCGTGTGTCTCCCCTTCGCCGAGAGGCGTGGGTAACCCGCTGAACCC 27289289 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| | |||| | | ||||||||| || | | | |||||||||| || || Sbjct 27289290 CACTCGTGATATGGATTGGGGATTGCAATTTTTTCCCATGAACGAGGAATTCC----CAG 27289345 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||| | | | |||||||| |||||||||||||||| Sbjct 27289346 CGCGGGTCATAAACTCTGGTTGATTAAGTCCCTGCCCTTTGTA 27289388 >seq4 Length=79859423 Score = 111 bits (122), Expect = 3e-22 Identities = 167/230 (73%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| |||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 17912001 CTTCTTAGATGGACAAGTGGCATTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 17911944 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA-CAGAGCCAACGA-GTTCAT 188 |||||||||||||| | |||| ||||||| || ||||| | |||| | || | || || Sbjct 17911943 ATGCCCTTAGATGTCCAGGGCTGCACGCGAGCCACACTCAGCAGATC--ACTATGTGTAT 17911886 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||| |||| ||| ||||||| | || | | || || | ||||| | | | Sbjct 17911885 ACCCTTTGCCGAGAGGCATGGGTAACCCGCCGAACCCCACTCATGATAGGGATTGGGGAA 17911826 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAG 298 |||||||||| | | ||| |||||| || |||||||||| |||| || Sbjct 17911825 TGCAATTATTTCCCAGGAACAAGGAATTCCCAGTAAGCGCGGATCATAAG 17911776 >seq10 Length=65230829 Score = 87.8 bits (96), Expect = 3e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| || |||||||||| ||||| ||| ||||||||||| ||||||||||||| Sbjct 56901662 AACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTT 56901721 Query 326 GTA 328 ||| Sbjct 56901722 GTA 56901724 >seq11 Length=79463822 Score = 82.4 bits (90), Expect = 1e-13 Identities = 57/62 (92%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 109 TTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||||| ||||||||||||||||||||||||||||| || |||| |||||||||| ||||| Sbjct 40041907 TTGAG-CAATAACAGGTCTGTGATGCCCTTAGATG-TCCGGGCTGCACGCGCGCCACACT 40041850 Query 169 GA 170 || Sbjct 40041849 GA 40041848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946998748416