Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20kisutch_20[refseq_20GCF_5F002021735.1_202017-03-06] 21,247 sequences; 2,369,932,239 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq193 104 4e-20 seq30 104 4e-20 seq2 100 5e-19 seq3094 95.1 2e-17 seq24 95.1 2e-17 seq5 93.3 7e-17 seq11 91.5 2e-16 seq8 91.5 2e-16 seq25 89.7 8e-16 seq6 87.8 3e-15 seq21 86.0 1e-14 seq3 86.0 1e-14 seq19 84.2 4e-14 seq13 84.2 4e-14 seq12 82.4 1e-13 seq1 82.4 1e-13 seq28 80.6 4e-13 seq20 73.4 6e-11 >seq193 Length=114801 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 37701 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 37644 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 37643 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 37590 >seq30 Length=42261227 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 30350301 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 30350244 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 30350243 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 30350190 >seq2 Length=74323923 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 29320179 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 29320236 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 29320237 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 29320290 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 19236568 GCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 19236618 >seq3094 Length=457514 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 47910 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 47967 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||| ||||||||| |||||||| ||||||||||||||||||||||| Sbjct 47968 GGTGCGAAGGTACCATCTGTGGGATTATGATTGAACGCCTCTAAGTCAGAATCC 48021 >seq24 Length=39320843 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 37011515 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 37011572 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 37011573 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATCC 37011626 >seq5 Length=71784841 Score = 93.3 bits (102), Expect = 7e-17 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || || | || || | Sbjct 29974232 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTTAGGAGCCAAT 29974289 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | || ||||||||||||| |||||||| |||||||||| |||||||||||||| Sbjct 29974290 GGTGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTTTAAGTCAGAATCCA 29974344 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 11270576 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCTTGGCTGAGGAGCCAAT 11270519 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 11270518 GGTGTGAAGCTACCATCTGTGGGATTATGACAGAACGCCTCTAAGTCAGAATCC 11270465 >seq11 Length=79463822 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | | ||| | || | || ||| || || | Sbjct 63078642 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTAGGTGTATGTGCTTGGATGAGGAGCCAAT 63078585 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 63078584 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 63078531 Score = 75.2 bits (82), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| |||||| | |||||| | ||||| | | | || |||| ||| | Sbjct 61539679 GTACGAGACGAACCGTAGG-TTCAGAC-ATTTGGTGTATTTGCTTGGCTGAGGAGGAAAC 61539736 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||||||||| |||||| |||||||| |||||||||||||| |||||||| Sbjct 61539737 GGTGCGAAGCTATCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATC 61539789 >seq8 Length=67521836 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 5/113 (4%) Strand=Plus/Minus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||||| | |||||| | ||||| | | | || |||| | ||||| Sbjct 8513084 TACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTACGTGCTTGGCTGAGC---CAGTG 8513030 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct 8513029 ATGCGAAGATACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 8512977 >seq25 Length=33789546 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTG-GTTTTTGCGGCTGTCTGACCAGGCAG 59 |||||||||||||||| | |||||| ||| || ||||| || |||| || || Sbjct 27174611 GTACGAGAGGAACCGCAGG-TTCAGACATTTTGTGTATTTGCT--TGGCTGAGGAGCCAA 27174667 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || | |||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 27174668 TGGTGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGATTCC 27174722 >seq6 Length=76709058 Score = 87.8 bits (96), Expect = 3e-15 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || | || || || | Sbjct 57354430 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCCGAGGAGCCAAT 57354373 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||| || ||||| ||||| |||||||||| |||||||| Sbjct 57354372 GATGCGAAGCTACCATCTGTGGGTTTATGACTGAATGCCTCTAAGTGAGAATCCA 57354318 >seq21 Length=34965661 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| | | || |||| || || | Sbjct 23930371 GTAGGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTACTTGATTGGCTGAGGAGCCAAT 23930314 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||||| |||||||||||||||| Sbjct 23930313 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGTCTCTAAGTCAGAATCC 23930260 >seq3 Length=70097442 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | ||||| | || | || |||| || || | Sbjct 13329946 GTACGAGAGGAACCGCAGG-TTCCGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 13330003 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| ||||| ||||||| |||||||||||||| ||||||||| Sbjct 13330004 GGTGCGAAGCTACTATCTGTGGGATTATAACTGAACGCCTCTAAATCAGAATCC 13330057 >seq19 Length=54998362 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 29772851 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGATGCGAAGCTACCATCTGTGGGATTATGA 29772910 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 29772911 CTGAACGCCTCTAAGTCAGAATCC 29772934 >seq13 Length=66844158 Score = 84.2 bits (92), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 23446001 GTACAAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 23446058 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 23446059 GGTGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTC--AGTCAGAATCC 23446110 >seq12 Length=51280603 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || ||| || || | Sbjct 1310131 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGTTGAGGAGCCAAT 1310188 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||| |||| ||| |||| |||||||||||||| ||||||||| Sbjct 1310189 GGTGCGAAGCTACCTTCTGTGGGACTATGACTGAACGCCTCTAAATCAGAATCC 1310242 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| | | |||| |||||||||||||| Sbjct 39217097 TGGCTGAGGAGCCAATGGTGCGAAGCTACCATCTGTGGAACTATGACTGAACGCCTCTAA 39217156 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 39217157 GTCAGAATCC 39217166 >seq1 Length=67385680 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||| | | || | || |||| || | | Sbjct 11040924 GTACGAGAGGAACCGCA-AGTTCAGAC-ATTTGATGTATGTGCTTGGCTGAGGAGCTAAT 11040867 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| |||||||||||| || || Sbjct 11040866 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAAAACCC 11040813 Score = 82.4 bits (90), Expect = 1e-13 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||||||||||| | |||| || | ||||| | | | || |||| || || || | Sbjct 58360916 GAGAGGAACCGCAGG-TTCA-AACATTTGGTGTATATGCTTGGCTGAGGAGACAATGGTG 58360973 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 ||||||||||||||| || |||| ||||||||||||||||||||||| Sbjct 58360974 CGAAGCTACCATCTGTGAGACTATGACTGAACGCCTCTAAGTCAGAATC 58361022 >seq28 Length=47366153 Score = 80.6 bits (88), Expect = 4e-13 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTG-GTTTTTGCGGCTGTCTGACCAGGCAG 59 |||||||| |||| || | |||||| ||| || ||||| || |||| || || Sbjct 2815086 GTACGAGAAGAACTGCAGG-TTCAGACATTTTGTGTATTTGCT--TGGCTGAGGAGCCAT 2815142 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 || | |||||||||||||| |||||||| |||||| ||||||||||||||||| Sbjct 2815143 TGGTGTGAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTCAGAATCC 2815197 >seq20 Length=40560786 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || || |||||||||| | |||||| | ||| | | | | || |||| || || | Sbjct 21623433 GTTCGGGAGGAACCGCAGG-TTCAGAC-ATTTGATGTATTTGATTGGCTGAGGAGCCAAT 21623376 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||| || |||||||| |||||||| | ||||||||||||| Sbjct 21623375 GGTGCGAAGCTACCATATGTGGGATTATGACTGAACGCATATAAGTCAGAATCC 21623322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819031383808