Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-41 SEQ46002 170 3e-40 SEQ57285 168 1e-39 seq24 168 1e-39 seq15 168 1e-39 seq8 165 1e-38 seq7 165 1e-38 seq3 141 1e-31 >seq5 Length=92202553 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 84796916 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 84796859 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 84796858 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 84796799 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| | | || || ||| ||||||| |||||||||| Sbjct 84796798 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 84796739 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 84796738 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 84796686 >SEQ46002 Length=887 Score = 170 bits (188), Expect = 3e-40 Identities = 181/234 (77%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||||||||| ||||| |||||||||| |||||| | Sbjct 378 GTACAAAGGGCAGGGACTTAATCAACGCGAGCT--ATGACCCGCGCTTACTGGGAATT-C 322 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 321 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 262 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| | | || || ||| ||||||| |||||||||| Sbjct 261 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 202 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 201 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 149 Score = 98.7 bits (108), Expect = 1e-18 Identities = 85/103 (83%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||||||||| ||||| |||||||||| |||| ||| Sbjct 770 GTACAAAGGGCAGGGACTTAATCAACGCGAGCT--ATGACCCGCGCTTACTGGGAA-TTC 714 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| | | || ||||||||| | ||||| ||||||| Sbjct 713 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGA 671 >SEQ57285 Length=65500 Score = 168 bits (186), Expect = 1e-39 Identities = 181/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 50373 GTACAAAGGGAAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 50430 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 50431 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 50490 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| | | || || ||| ||||||| |||||||||| Sbjct 50491 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 50550 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 50551 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 50603 >seq24 Length=40362479 Score = 168 bits (186), Expect = 1e-39 Identities = 181/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 26390657 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 26390714 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 26390715 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 26390774 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| | || | | || || ||| ||||||| |||||||||| Sbjct 26390775 ACCCACGCCTCTCGGCGAGGGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 26390834 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 26390835 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 26390887 >seq15 Length=63368167 Score = 168 bits (186), Expect = 1e-39 Identities = 181/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| ||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 395729 GTAGAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 395672 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| || || Sbjct 395671 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCAGGTT 395612 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| || | | | || || ||| ||||||| |||||||||| Sbjct 395611 ACCCACGCCTCTCGGCGAATGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 395552 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 395551 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 395499 Score = 118 bits (130), Expect = 2e-24 Identities = 156/217 (72%), Gaps = 27/217 (12%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | ||||||||||||| ||||| |||||||||| |||| ||| Sbjct 38287710 GTACAAAGGGCAGGGACTTTATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 38287767 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | || ||||||||| | ||||| ||||||| |||| | ||| Sbjct 38287768 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCAGGGGTTA 38287827 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | ||||| |||| || | ||||| ||||| |||| | Sbjct 38287828 C-------------CCAAGCTGAT----CCG--------CTTAGTGTGGCGCGTGTGCAG 38287862 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | ||||||||||||||||||||||||||||||| Sbjct 38287863 CCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 38287899 >seq8 Length=83778284 Score = 165 bits (182), Expect = 1e-38 Identities = 180/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 79439558 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 79439501 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| |||| | || Sbjct 79439500 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGGGTTCATCGGGTT 79439441 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||| |||| | | || || ||| ||||||| |||||||||| Sbjct 79439440 ACCCACGCCTCTCGTTGAAGGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 79439381 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 79439380 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 79439328 >seq7 Length=79763776 Score = 165 bits (182), Expect = 1e-38 Identities = 180/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| |||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 79693278 GTACAAAGAGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 79693221 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| |||| || |||| | || Sbjct 79693220 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCAAGAGTGGGGTTCATCGGGTT 79693161 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| | | || || ||| ||||||| |||||||||| Sbjct 79693160 ACCCACGCCTCTCGGCGAAGGGTAGACACACGCTGATCCGCTCAGTGTGGCGCGCGTGCA 79693101 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 79693100 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 79693048 >seq3 Length=84937469 Score = 141 bits (156), Expect = 1e-31 Identities = 175/234 (75%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| |||| || ||||| |||||| |||||| | Sbjct 37902723 GTACAAAGGGCAGGGACTTAATCAACCCGAGTTT-ATGACCCGCGCTG----GGAATT-C 37902670 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | |||| ||||||| |||| | || Sbjct 37902669 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCGTATCACGAATGGGGTTCAGCGGGTT 37902610 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| ||||| |||| || | || || ||| | ||||| |||||||||| Sbjct 37902609 ACCCACGCCTCTCGGCGAAGGGGAGACACACGCTGATCCGCTGAGTGTGGCGCGCGTGCA 37902550 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 37902549 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 37902497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751038664115