Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value SEQ57285 116 2e-24 seq20 116 2e-24 seq8 116 2e-24 seq2 116 2e-24 seq15 113 2e-23 seq25 107 9e-22 seq7 107 9e-22 seq9 100 1e-19 SEQ65245 98.7 5e-19 SEQ27593 98.7 5e-19 seq29 98.7 5e-19 seq3 87.8 8e-16 >SEQ57285 Length=65500 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 49050 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 48991 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || | | |||| ||||| |||||| ||| Sbjct 48990 CCGAATCCCTGTCCGTCTGGCGGGCACGGGAAATGTGGTGTA 48949 >seq20 Length=41412012 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 18820 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 18879 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || | | |||| ||||| |||||| ||| Sbjct 18880 CCGAATCCCTGTCCGTCTGGCGGGCACGGGAAATGTGGTGTA 18921 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 20671 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 20730 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || | | |||| ||||| |||||| ||| Sbjct 20731 CCGAATCCCTGTCCGTCTGGCGGGCACGGGAAATGTGGTGTA 20772 >seq8 Length=83778284 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 79440884 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 79440943 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || | | |||| ||||| |||||| ||| Sbjct 79440944 CCGAATCCCTGTCCGTCTGGCGGGCACGGGAAATGTGGTGTA 79440985 Score = 82.4 bits (90), Expect = 4e-14 Identities = 76/97 (78%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 6 AGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAA 65 |||||||||||||||||||||||||| || || ||||||||||||| | ||||| Sbjct 13781234 AGAAACTAACCAGGATTCCCTCAGTAGCG-------AAGAGGGAAGAGCCCAACACCGAA 13781182 Query 66 TCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||| | || | | |||| ||||| |||||| ||| Sbjct 13781181 TCCCTGTCCGTCTGGCGGGCACGGGAAATGTGGTGTA 13781145 >seq2 Length=85480851 Score = 116 bits (128), Expect = 2e-24 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 45892261 GGAAAATAAACTAACCAGGATTCCCTCAGTAGCGGCGAGTGAAGAGGGAAGAGCCCAGCG 45892320 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 || |||||| | || | | ||| ||||| ||||||| || Sbjct 45892321 CCAAATCCCTGTCCGTCCGGCGGGAACGGGAAATGTGGCATA 45892362 >seq15 Length=63368167 Score = 113 bits (124), Expect = 2e-23 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 397047 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 397106 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 ||||||||| | || | | |||| ||||| ||||| Sbjct 397107 CCGAATCCCTGTCCGTCTGGCGGGCACGGGAAATGTG 397143 Score = 82.4 bits (90), Expect = 4e-14 Identities = 81/103 (79%), Gaps = 9/103 (9%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||| ||||||||||||| || ||| ||||||||||||| | Sbjct 38286413 GGAAAATAAACTAACCGGGATTCCCTCAGT-------AGCGAAGAGGGAAGAGCCCAACA 38286361 Query 61 CCGAATCCCCGCCCCGCGGTG-GGGCGCGGGACATGTGGCGTA 102 ||||||||| | |||| || |||| ||||| |||||| ||| Sbjct 38286360 CCGAATCCCTG-TCCGCTCTGCGGGCACGGGAAATGTGGTGTA 38286319 >seq25 Length=82601656 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||| || ||||||||||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 39135032 GGAAGAGGAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 39135091 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || | | |||| ||||| |||||| ||| Sbjct 39135092 CCGAATCCCTGACCGTCCGGCGGGCACGGGAAATGTGGTGTA 39135133 >seq7 Length=79763776 Score = 107 bits (118), Expect = 9e-22 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||||| | Sbjct 79694233 GGAAAATAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAACA 79694174 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||| | || | | |||| |||| |||||| ||| Sbjct 79694173 CCGAATCCCTGTCCGTCTGGCGGGCATGGGAAATGTGGTGTA 79694132 >seq9 Length=68467736 Score = 100 bits (110), Expect = 1e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 5 AAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGA 64 || |||||||||||||||||||||||| | | ||| ||| |||||||||||||||||||| Sbjct 26541320 AAAAAACTAACCAGGATTCCCTCAGTAGCTGTGAGCGAAGAGGGAAGAGCCCAGCGCCGA 26541379 Query 65 ATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||||| | | | || |||||| |||||||||| Sbjct 26541380 ATCCCCTTCTGTCCGGTGGTTGCGGGAAATGTGGCGTA 26541417 >SEQ65245 Length=119973 Score = 98.7 bits (108), Expect = 5e-19 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 6 AGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAA 65 |||||||||||||||||||||||||| ||||||| | | ||||||||||||| | ||||| Sbjct 18081 AGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGGAGAGGGAAGAGCCCAACACCGAA 18022 Query 66 TCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||| | || | | |||| | ||| |||||| ||| Sbjct 18021 TCCCTGTCCGTCCGGCGGGCACAGGAAATGTGGTGTA 17985 >SEQ27593 Length=2124 Score = 98.7 bits (108), Expect = 5e-19 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 6 AGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAA 65 |||||||||||||||||||||||||| ||||||| | | ||||||||||||| | ||||| Sbjct 1877 AGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGGAGAGGGAAGAGCCCAACACCGAA 1818 Query 66 TCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 |||| | || | | |||| | ||| |||||| ||| Sbjct 1817 TCCCTGTCCGTCCGGCGGGCACAGGAAATGTGGTGTA 1781 >seq29 Length=42631536 Score = 98.7 bits (108), Expect = 5e-19 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| |||||||||||||||||||||||| | ||||| ||| | |||||||||||||| Sbjct 41571092 GGAAAATAAACTAACCAGGATTCCCTCAGTAGCAGCGAGCGAAGAAGGAAGAGCCCAGCG 41571033 Query 61 CCGAATCCC 69 ||||||||| Sbjct 41571032 CCGAATCCC 41571024 >seq3 Length=84937469 Score = 87.8 bits (96), Expect = 8e-16 Identities = 77/97 (79%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| |||||||||||||||||||||||| | || ||||||||||||||| Sbjct 37903951 GGAAAATAAACTAACCAGGATTCCCTCAGTAGCAGC-------AAGGGAAGAGCCCAGCA 37904003 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTG 97 ||||||||||| || | | ||||||||| ||||| Sbjct 37904004 CCGAATCCCCGTCCGTCCGGCAGGCGCGGGAAATGTG 37904040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230114964240