Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value SEQ57285 250 4e-64 seq24 244 2e-62 seq15 244 2e-62 seq8 244 2e-62 SEQ53077 224 2e-56 SEQ46002 206 4e-51 seq3 205 1e-50 seq5 201 2e-49 seq7 168 1e-39 seq9 156 7e-36 SEQ96610 78.8 1e-12 >SEQ57285 Length=65500 Score = 250 bits (276), Expect = 4e-64 Identities = 210/253 (83%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 50527 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 50586 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 50587 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 50644 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 50645 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 50702 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 50703 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAG 50762 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 50763 CTATCAATCTGTC 50775 >seq24 Length=40362479 Score = 244 bits (270), Expect = 2e-62 Identities = 209/253 (83%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 26390811 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 26390870 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 26390871 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 26390928 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 26390929 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 26390986 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 26390987 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAG 26391046 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 26391047 CTATCAATCTGTC 26391059 >seq15 Length=63368167 Score = 244 bits (270), Expect = 2e-62 Identities = 209/253 (83%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 395575 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 395516 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | |||| ||| Sbjct 395515 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCGACCGC 395458 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 395457 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 395400 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 395399 ACAAATCGTTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAG 395340 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 395339 CTATCAATCTGTC 395327 Score = 217 bits (240), Expect = 2e-54 Identities = 198/246 (80%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||| ||||| |||| |||| | ||||||||||||||||||||||||||||||| | | Sbjct 38287845 AGTGTGGCGCGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTT--A 38287902 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA----GT 133 | || |||||| || ||| | |||||||||||||| | | || ||| || Sbjct 38287903 ATCTCGTGTGGCTGAAATCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCTCGGGGT 38287962 Query 134 CG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || || |||||||||| | ||||||||||| |||||||||||||||||||||| Sbjct 38287963 CGCATAA--CTATTTAGCATGCCGGAGTCTCGTTCGTGATCGGAATTAACCAGACAAATC 38288020 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 || ||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||| Sbjct 38288021 GCTTCACCAACTACGAATGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 38288080 Query 253 TCTGTC 258 |||||| Sbjct 38288081 TCTGTC 38288086 >seq8 Length=83778284 Score = 244 bits (270), Expect = 2e-62 Identities = 209/253 (83%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 79439404 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 79439345 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 79439344 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 79439287 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 79439286 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 79439229 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 79439228 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAG 79439169 Query 246 CTATCAATCTGTC 258 ||||||||||||| Sbjct 79439168 CTATCAATCTGTC 79439156 >SEQ53077 Length=1174 Score = 224 bits (248), Expect = 2e-56 Identities = 193/235 (82%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 29 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGG 88 ||||| |||| | ||||||||||||||||||||||||||||||| |||| || | ||| Sbjct 1 CGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCAATCT-CGTGTGG 58 Query 89 CTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGC-----T 143 ||| | |||| | |||||||||||||| | | || ||| ||| | || | Sbjct 59 CTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC--TCGGGGCCGCATAACT 116 Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 | |||||| | |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 117 AGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAAC 176 Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 177 TAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 231 >SEQ46002 Length=887 Score = 206 bits (228), Expect = 4e-51 Identities = 186/229 (81%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 225 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 166 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 165 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 108 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 107 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 50 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 ||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 49 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAA 1 >seq3 Length=84937469 Score = 205 bits (226), Expect = 1e-50 Identities = 195/246 (79%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| |||| Sbjct 37902566 AGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCAA 37902508 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGAT 137 || | |||||| | | || | || |||| ||| || | | || ||| ||| Sbjct 37902507 TCT-CGTGTGGCTGAACGTCACTTGTTCCTCGAAGGAGTTGGACGCCGACCGC--TCGGG 37902451 Query 138 GGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | || || |||||| | |||||||||||||| |||| ||||||||||||| Sbjct 37902450 GCCGCATAACTAGTTAGCATGCCGGAATCTCGTTCGTTATCAGAATGAACCAGACAAATC 37902391 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||| Sbjct 37902390 GCTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 37902331 Query 253 TCTGTC 258 |||||| Sbjct 37902330 TCTGTC 37902325 >seq5 Length=92202553 Score = 201 bits (222), Expect = 2e-49 Identities = 182/224 (81%), Gaps = 10/224 (4%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 84796762 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 84796703 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || |||| || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 84796702 GC-TCAATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 84796645 Query 131 AGTCGATGGGGC-----TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | || || |||||| | ||||||||||||||||||||||||||| Sbjct 84796644 --TCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 84796587 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 84796586 ACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCA 84796543 >seq7 Length=79763776 Score = 168 bits (186), Expect = 1e-39 Identities = 143/175 (82%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 89 CTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGC-----T 143 ||| | |||| | |||||||||||||| | |||| ||| ||| | || | Sbjct 79692394 CTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCGACCGC--TCGGGGCCGCATAACT 79692337 Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 | |||||| | |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 79692336 AGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAAC 79692277 Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 79692276 TAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 79692222 Score = 154 bits (170), Expect = 2e-35 Identities = 154/195 (79%), Gaps = 10/195 (5%) Strand=Plus/Minus Query 12 TCCG-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 |||| ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 79693124 TCCGCTCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 79693065 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 | ||||| | || |||||| | |||| | |||||||||||||| | |||| ||| Sbjct 79693064 G-CTCAATC-TCGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCGACC-- 79693009 Query 131 AGTCGATGGGG-----CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 ||| | | ||| |||||| | ||||||||||||||||||||||||||| Sbjct 79693008 GCTCGGGGCCGCATAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAG 79692949 Query 186 ACAAATCACTCCACC 200 ||||||| ||||||| Sbjct 79692948 ACAAATCGCTCCACC 79692934 >seq9 Length=68467736 Score = 156 bits (172), Expect = 7e-36 Identities = 94/99 (95%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 28211678 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCATCTAAGAACGGCCATGC 28211737 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||||| |||||| ||||||||||| |||||||| Sbjct 28211738 ACCACCACCCACAGAATCGAGAAAGAGCTAGCAATCTGT 28211776 >SEQ96610 Length=82026 Score = 78.8 bits (86), Expect = 1e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 12146 GGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 12099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795781393041