Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value SEQ46002 86.0 4e-15 seq24 86.0 4e-15 seq15 86.0 4e-15 seq8 86.0 4e-15 seq5 86.0 4e-15 seq7 82.4 5e-14 seq3 78.8 6e-13 SEQ57285 77.0 2e-12 seq29 73.4 2e-11 >SEQ46002 Length=887 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 418 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 361 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 360 TAAT-CAACGCGAGCT 346 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 810 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 753 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 752 TAAT-CAACGCGAGCT 738 >seq24 Length=40362479 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 26390617 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 26390674 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 26390675 TAAT-CAACGCGAGCT 26390689 >seq15 Length=63368167 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 38287670 CTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 38287727 Query 109 TAATACAACGCAAGCT 124 | || |||||| |||| Sbjct 38287728 TTAT-CAACGCGAGCT 38287742 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 395769 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTAGAAAGGGCAGGGACT 395712 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 395711 TAAT-CAACGCGAGCT 395697 >seq8 Length=83778284 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 79439598 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 79439541 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 79439540 TAAT-CAACGCGAGCT 79439526 >seq5 Length=92202553 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 84796956 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 84796899 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 84796898 TAAT-CAACGCGAGCT 84796884 >seq7 Length=79763776 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||| |||||||| Sbjct 79693318 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGAGCAGGGACT 79693261 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 79693260 TAAT-CAACGCGAGCT 79693246 >seq3 Length=84937469 Score = 78.8 bits (86), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 37902763 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 37902706 Query 109 TAATACAAC 117 |||| |||| Sbjct 37902705 TAAT-CAAC 37902698 >SEQ57285 Length=65500 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| |||||||||| |||||||||||| |||||| Sbjct 50333 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGTTGTGTACAAAGGGAAGGGACT 50390 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 50391 TAAT-CAACGCGAGCT 50405 >seq29 Length=42631536 Score = 73.4 bits (80), Expect = 2e-11 Identities = 56/64 (88%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| ||||||| ||||||||||| ||||||||||||||||||| Sbjct 1461697 CTCACTAAACCATCCAATT-GGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 1461754 Query 109 TAAT 112 |||| Sbjct 1461755 TAAT 1461758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300427869980