Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value SEQ96610 93.3 5e-17 SEQ57285 93.3 5e-17 SEQ53077 93.3 5e-17 seq15 86.0 7e-15 SEQ54675 84.2 3e-14 seq9 84.2 3e-14 seq5 84.2 3e-14 seq7 82.4 9e-14 >SEQ96610 Length=82026 Score = 93.3 bits (102), Expect = 5e-17 Identities = 143/194 (74%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 11703 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 11645 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 11644 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 11585 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | || ||| |||| Sbjct 11584 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCG 11525 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 11524 CCTCGCGGCGGACC 11511 >SEQ57285 Length=65500 Score = 93.3 bits (102), Expect = 5e-17 Identities = 143/194 (74%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 51171 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 51229 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 51230 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 51289 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | || ||| |||| Sbjct 51290 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCG 51349 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 51350 CCTCGCGGCGGACC 51363 >SEQ53077 Length=1174 Score = 93.3 bits (102), Expect = 5e-17 Identities = 143/194 (74%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 628 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 686 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA-AGTCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 687 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACACTTCGGACCCCGCGGGAC 746 Query 127 AC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | || ||| |||| Sbjct 747 ACTCAGTTAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCG 806 Query 182 CCGTGAGGCGGACC 195 || | |||||||| Sbjct 807 CCTCGCGGCGGACC 820 >seq15 Length=63368167 Score = 86.0 bits (94), Expect = 7e-15 Identities = 140/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 38288481 AAACCCACAAAATAGAATCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 38288539 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCAC 126 | ||||||||||||||||||||||| |||| ||||| | | | | || | | || Sbjct 38288540 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGAC 38288599 Query 127 AC-CAATGAAG-GCATACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 || || | ||| |||| || || ||||| | |||||||| | || ||| || || Sbjct 38288600 ACTCAGTTAAGAGCATCGAGGGGAGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTTGC 38288659 Query 183 CGTGAGGCGGACC 195 | | |||||||| Sbjct 38288660 CTCGCGGCGGACC 38288672 >SEQ54675 Length=1406 Score = 84.2 bits (92), Expect = 3e-14 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 1056 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 998 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 997 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 958 >seq9 Length=68467736 Score = 84.2 bits (92), Expect = 3e-14 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 28212172 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 28212230 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | ||||||||||||||||||||||| |||| ||||| Sbjct 28212231 ACCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 28212270 >seq5 Length=92202553 Score = 84.2 bits (92), Expect = 3e-14 Identities = 137/187 (73%), Gaps = 9/187 (5%) Strand=Plus/Minus Query 17 CAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAAG--C 74 |||||||| || | ||||||||| |||||||| ||| |||||| |||| | | Sbjct 84792369 CAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCGACCGGGC 84792311 Query 75 CTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCACAC-CAAT 132 |||||||||||||||||||||| |||| ||||| | | | | || | | |||| || | Sbjct 84792310 CTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGACACTCAGT 84792251 Query 133 GAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGCCGTGAG 188 ||| |||| ||| | || ||||| | |||||||| | || ||| |||||| | | Sbjct 84792250 TAAGAGCATCGAGGGGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGCCTCGCG 84792191 Query 189 GCGGACC 195 ||||||| Sbjct 84792190 GCGGACC 84792184 >seq7 Length=79763776 Score = 82.4 bits (90), Expect = 9e-14 Identities = 142/195 (73%), Gaps = 10/195 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||| ||||||||| || | ||||||||| |||||||| ||| |||||| |||| Sbjct 79691833 AAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTCAGGCG 79691775 Query 70 TAAG--CCTGCTTTGAACACTCTAA-TTTTCTCAAGGTAAAAG-TCCTGGTTCCTCCGCA 125 | ||||||||||||||||||| |||| |||| ||||| | | | | || | | | Sbjct 79691774 ACCGGGCCTGCTTTGAACACTCTAATTTTTTTCAAAGTAAACGCTTCGGACCCCGCGGGA 79691715 Query 126 CAC-CAATGAAG-GCAT-ACGGGCTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTC 180 ||| || | ||| |||| | | | || ||||| | |||||||| | || ||| ||| Sbjct 79691714 CACTCAGTTAAGAGCATCGAGAGGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTC 79691655 Query 181 GCCGTGAGGCGGACC 195 ||| | |||||||| Sbjct 79691654 GCCTCGTGGCGGACC 79691640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594439112874