Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value SEQ96610 98.7 1e-18 SEQ57285 98.7 1e-18 SEQ54675 98.7 1e-18 SEQ53077 98.7 1e-18 seq9 98.7 1e-18 seq15 93.3 4e-17 seq7 91.5 2e-16 seq5 89.7 5e-16 seq14 84.2 2e-14 >SEQ96610 Length=82026 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 11605 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 11664 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | |||||||||||||| ||||| Sbjct 11665 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 11703 >SEQ57285 Length=65500 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 51269 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 51210 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | |||||||||||||| ||||| Sbjct 51209 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 51171 >SEQ54675 Length=1406 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 958 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 1017 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | |||||||||||||| ||||| Sbjct 1018 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 1056 >SEQ53077 Length=1174 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 726 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 667 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | |||||||||||||| ||||| Sbjct 666 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 628 >seq9 Length=68467736 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/100 (83%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 28212270 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 28212211 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | |||||||||||||| ||||| Sbjct 28212210 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 28212172 >seq15 Length=63368167 Score = 93.3 bits (102), Expect = 4e-17 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 38288579 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 38288520 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||| ||||||||| | || ||||||||||| ||||| Sbjct 38288519 GAATAATGGAATAGGAC-TCCGATTCTATTTTGTGGGTTT 38288481 >seq7 Length=79763776 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAA-AATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCAT 69 ||||||||||||| |||||||| |||||||||||||| | || |||||| | | Sbjct 79691734 TTTACTTTGAAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTA 79691793 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 |||||||| ||||||||| | |||||||||||||| ||||| Sbjct 79691794 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTT 79691833 >seq5 Length=92202553 Score = 89.7 bits (98), Expect = 5e-16 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||||||||||||| | || |||||| | | | Sbjct 84792278 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAG 84792337 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTG 103 ||||||| ||||||||| | ||||||||||||| Sbjct 84792338 GAATAATGGAATAGGAC-TCCGGTTCTATTTTG 84792369 >seq14 Length=80358725 Score = 84.2 bits (92), Expect = 2e-14 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC--TTTGCTCGAATACATTACCATG 70 ||| ||||||||||| | || |||||||||||||| || || |||||| | | | Sbjct 888482 TTTGCTTTGAAAAAAATGTAGTGTTCAAAGCAGGCCAGTTCGCCTGAATACTGCAGCTAG 888541 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 | ||||| |||||||||| ||||||||||||||| ||||| Sbjct 888542 GTATAATGGAATAGGACG-GCGGTTCTATTTTGTGGGTTT 888580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511345473440