Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5 194 3e-47 SEQ46002 190 4e-46 SEQ57285 188 1e-45 seq24 188 1e-45 seq15 188 1e-45 seq8 185 2e-44 seq7 185 2e-44 seq3 154 3e-35 SEQ53077 75.2 2e-11 >seq5 Length=92202553 Score = 194 bits (214), Expect = 3e-47 Identities = 200/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 84796660 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 84796717 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 84796718 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 84796777 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 84796778 CCTTCGCCGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 84796837 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 84796838 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 84796897 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 84796898 AAGTCCCTGCCCTTTGTA 84796915 >SEQ46002 Length=887 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 123 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 180 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 181 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 240 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 241 CCTTCGCCGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 300 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 301 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCAT-AGCTCGCGTTGATT 359 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 360 AAGTCCCTGCCCTTTGTA 377 Score = 114 bits (126), Expect = 2e-23 Identities = 109/138 (79%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 633 CCTTCGCCGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 692 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 693 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCAT-AGCTCGCGTTGATT 751 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 752 AAGTCCCTGCCCTTTGTA 769 >SEQ57285 Length=65500 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 50629 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 50572 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 50571 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 50512 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 50511 CCTTCGCCGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 50452 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 50451 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 50392 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||| ||||||||| Sbjct 50391 AAGTCCCTTCCCTTTGTA 50374 >seq24 Length=40362479 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 26390913 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 26390856 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 26390855 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 26390796 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || | |||| ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 26390795 CCCTCGCCGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 26390736 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 26390735 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 26390676 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 26390675 AAGTCCCTGCCCTTTGTA 26390658 >seq15 Length=63368167 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 395473 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 395530 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 395531 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 395590 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | || |||| ||| ||||||| || | || | | ||||| | ||||| | | |||| Sbjct 395591 CATTCGCCGAGAGGCGTGGGTAACCTGATGAACCCCACTCGTGATAGGGATTGGGGATTG 395650 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 395651 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 395710 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||||||||||||| || Sbjct 395711 AAGTCCCTGCCCTTTCTA 395728 Score = 127 bits (140), Expect = 4e-27 Identities = 155/215 (72%), Gaps = 26/215 (12%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||| | |||| |||| ||||| ||||| | | Sbjct 38287899 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACACGCGCCACACTAAGCG 38287840 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 |||| ||||| |||| | | || | | ||||| Sbjct 38287839 G------------ATCAGCTTGG-------------GTAACCCC-TGAACCCCACTCGTG 38287806 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 | ||||| | | |||||||||||| | | | |||||||||| || |||||||||| ||| Sbjct 38287805 ATAGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTC 38287746 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| ||||||||| | |||||||||||||||| Sbjct 38287745 ATAAGCTCGCGTTGATAAAGTCCCTGCCCTTTGTA 38287711 >seq8 Length=83778284 Score = 185 bits (204), Expect = 2e-44 Identities = 198/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 79439302 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 79439359 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 79439360 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 79439419 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| || ||| ||||||| | | || | | ||||| | ||||| | | |||| Sbjct 79439420 CCTTCAACGAGAGGCGTGGGTAACCCGATGAACCCCACTCGTGATAGGGATTGGGGATTG 79439479 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 79439480 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 79439539 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 79439540 AAGTCCCTGCCCTTTGTA 79439557 >seq7 Length=79763776 Score = 185 bits (204), Expect = 2e-44 Identities = 198/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 79693022 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 79693079 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 79693080 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGATCAGCGTGTGTCTAC 79693139 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||| |||| ||| ||||||| | | || | | || || | ||||| | | |||| Sbjct 79693140 CCTTCGCCGAGAGGCGTGGGTAACCCGATGAACCCCACTCTTGATAGGGATTGGGGATTG 79693199 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 79693200 CAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 79693259 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||| ||||||| Sbjct 79693260 AAGTCCCTGCTCTTTGTA 79693277 >seq3 Length=84937469 Score = 154 bits (170), Expect = 3e-35 Identities = 169/223 (76%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||||||||| || Sbjct 37902505 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCAC 37902563 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||| | | || || || || |||| |||| ||| ||||||| | | || | Sbjct 37902564 ACTCAGCGGATCAGCGTGTGTCTCCCCTTCGCCGAGAGGCGTGGGTAACCCGCTGAACCC 37902623 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| | |||| | | |||||||||||| | | | |||||||||| || || Sbjct 37902624 CATTCGTGATACGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCC----CAG 37902679 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||| | | || |||||||| |||||||||||||||| Sbjct 37902680 CGCGGGTCATAAACTCGGGTTGATTAAGTCCCTGCCCTTTGTA 37902722 >SEQ53077 Length=1174 Score = 75.2 bits (82), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 85 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 28 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACG 157 |||||||||||||| | |||| ||||| Sbjct 27 ATGCCCTTAGATGTCCGGGGCTGCACG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945950065408