Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncorhynchus_20mykiss_20[refseq_20GCF_5F002163495.1_202017-06-02] 131,961 sequences; 2,178,999,613 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value SEQ14141 104 4e-20 seq2 104 4e-20 seq25 100 5e-19 seq20 100 5e-19 seq3 100 5e-19 seq18 95.1 2e-17 seq26 93.3 7e-17 seq7 93.3 7e-17 seq12 87.8 3e-15 seq17 86.0 1e-14 seq6 86.0 1e-14 seq15 82.4 1e-13 seq8 82.4 1e-13 seq4 80.6 4e-13 seq23 77.0 5e-12 seq16 77.0 5e-12 seq27 73.4 6e-11 >SEQ14141 Length=10722 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 10711 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 10654 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 10653 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 10600 >seq2 Length=85480851 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 51807542 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 51807599 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 51807600 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 51807653 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || ||| |||||||||||||||| |||||||| Sbjct 65711461 TTGGTGTATGTGCTTGGCTGAAGAGCCAATGCTGCGAAGCTACCATCTGTGGGATTATGA 65711402 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 ||||| ||||||| |||||||||| Sbjct 65711401 CTGAATGCCTCTATGTCAGAATCC 65711378 >seq25 Length=82601656 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 39143690 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 39143633 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct 39143632 GGTGCGAAGTTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 39143579 >seq20 Length=41412012 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 30950602 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 30950659 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 30950660 GGTGTGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 30950713 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 40276350 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGTTTGGCTGAGGAGCCAAT 40276407 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||| |||| ||||| |||||||||||||||||| Sbjct 40276408 GGTGCGAAGCTACCATCTGTGGGACTATGACTGAATGCCTCTAAGTCAGAATCC 40276461 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 3451606 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGTTTGGCTGAGGAGCCAAT 3451663 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||||| ||||| || ||||||||||||||| Sbjct 3451664 GGTGCGAAGCTACCATCCGTGGGATTATGACTGAATGCTTCTAAGTCAGAATCC 3451717 >seq3 Length=84937469 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| | ||||| | || | || |||| || || | Sbjct 39792069 GTACGAGAGGAACCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 39792126 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 39792127 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 39792180 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 30236572 GCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 30236622 >seq18 Length=61719220 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| ||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 44657036 GTACGACAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 44657093 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||| ||||||||||||||||| Sbjct 44657094 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACCCCTCTAAGTCAGAATCC 44657147 >seq26 Length=40182520 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 || |||||||||||| | |||||| | ||||| | | | || |||| || ||||| Sbjct 15514891 TATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTACGTGCTTGGCTGAGGAGCCAGTG 15514948 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 15514949 ATGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATCC 15515001 >seq7 Length=79763776 Score = 93.3 bits (102), Expect = 7e-17 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | | | || || | || || | Sbjct 34370516 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATATGCTTGGCTTAGGAGCCAAT 34370573 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | || ||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 34370574 GGTGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCA 34370628 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| || ||||| || | || |||| || || | Sbjct 16483949 GTACGAGAGGAACCGCAGG-TTCAGA-TATTTGGTGCATGTGCTTGGCTGAGGAGCCAAT 16483892 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||| |||||||||| |||||||| | ||| |||||||||||||||||| Sbjct 16483891 GGTGCGAATCTACCATCTGTGGGATTATGACAGAATGCCTCTAAGTCAGAATCC 16483838 >seq12 Length=89655008 Score = 87.8 bits (96), Expect = 3e-15 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | | | || |||| || || | Sbjct 59474097 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATTTGCTTGGCTGAGGAGCCAAT 59474040 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||||||||||| || ||||| ||||| |||||||||| |||||||| Sbjct 59474039 GATGCGAAGCTACCATCTGTGGGTTTATGACTGAATGCCTCTAAGTGAGAATCCA 59473985 >seq17 Length=76527837 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||| | | || | || |||| || | | Sbjct 17930691 GTACGAGAGGAACCGCA-AGTTCAGAC-ATTTGATGTATGTGCATGGCTGAGGAGCTAAT 17930634 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| |||||||||||| ||||| Sbjct 17930633 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAAAATCC 17930580 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| |||||| ||||||||||||||||| Sbjct 48568809 GCGAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTCAGAATCC 48568759 >seq6 Length=82930723 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || || | || || | Sbjct 16260760 GTACGAGAGGAACCGCAGT-TTCAGAC-ATTTGGTGTATGTGCTTGGCTCAGGAGCCAAT 16260817 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||| ||||| ||||||| ||||| |||||||||||||||||| Sbjct 16260818 GGTGCGAAGCTACTATCTGTGGGATTATAACTGAATGCCTCTAAGTCAGAATCC 16260871 >seq15 Length=63368167 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| | | | |||||| | ||||| | || | || |||| || | | Sbjct 37972987 GTACGAGAGGAAGCACAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCTAAT 37972930 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| ||||||| |||||||||| Sbjct 37972929 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTACGTCAGAATCC 37972876 >seq8 Length=83778284 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 79445768 TGGCTGAGGAGCCAATGGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 79445827 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 79445828 GTCAGAATCC 79445837 >seq4 Length=85056421 Score = 80.6 bits (88), Expect = 4e-13 Identities = 75/94 (80%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||| ||||| Sbjct 75166397 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGTAGCCAATGGTGCGAAGCTACTATCTGT 75166339 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||| |||||||||||||||||||||||| Sbjct 75166338 GGGATTATGACTGAACGCCTCTAAGTCAGAATCC 75166305 >seq23 Length=49041849 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| | |||||| | ||||| | | | || |||| ||| | Sbjct 32398465 GTAAGAGAGGAACCGTAGG-TTCAGAC-ATTTGGTGTATTTGCTTGGCTGAGGAGGAAAC 32398522 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||| |||||| |||||||| |||||||||||||| ||||||||| Sbjct 32398523 GGTGCGAAGCTATCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAATCC 32398576 >seq16 Length=70896079 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 || ||||||||||||| | |||||| | ||| | | | | || |||| || || | Sbjct 21978833 GTTCGAGAGGAACCGCAGG-TTCAGAC-ATTTGATGTATTTGATTGGCTGAGGAGTCAAT 21978776 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||| || |||||||| |||||||| | ||||||||||||| Sbjct 21978775 GGTGCGAAGCTACCATATGTGGGATTATGACTGAACGCATATAAGTCAGAATCC 21978722 >seq27 Length=45316876 Score = 73.4 bits (80), Expect = 6e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||||| |||||||| |||||| ||||||||||||||||| Sbjct 16134840 CGAAGCTACCATCTGTGGGATTATGACTGAACCCCTCTAAGTCAGAATCC 16134889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818152757504