Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15 205 7e-48 seq16 123 2e-23 seq11 102 6e-17 seq21 95.1 1e-14 >seq15 Length=39264731 Score = 205 bits (226), Expect = 7e-48 Identities = 475/706 (67%), Gaps = 10/706 (1%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || || |||||||| || | |||||| || |||||||| ||| Sbjct 17055324 AGAGCGATAGAGGCCAGATTGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATT 17055383 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| || || ||||| |||||||||| |||||| || || ||||| | ||| Sbjct 17055384 TCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 17055443 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || || || ||||| | ||||||||| || || || || || ||||| ||||| || Sbjct 17055444 CAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCA 17055503 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAA-TGTTC 66243 | ||| || | ||||||||| ||| | |||| || | | || || || | Sbjct 17055504 TACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGT- 17055562 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| | ||| || || ||||| || ||| | || || | | ||| || Sbjct 17055563 GTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCA 17055622 Query 66304 CATCAGCGACCAATCACCATCCTGTTCTACAC--GACGCATAAATAGATCAGGTATCCAG 66361 |||||| ||||| || | | |||||| ||| | ||| || || ||||| ||||| Sbjct 17055623 CATCAGGGACCAGTCTTCGT--TGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCAC 17055680 Query 66362 AGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT-CAATGCCGTGATTTTTGCGCAAGTC 66420 ||||||||||| || || | ||||| ||||||| | | ||||| || || || || Sbjct 17055681 AGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTC 17055739 Query 66421 GAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACG 66480 ||||| ||||| | || ||||| || |||||||| |||||||| | ||| | Sbjct 17055740 CAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCT 17055799 Query 66481 TTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 |||| ||| || || || || || || || |||||| | || | |||||| || || Sbjct 17055800 TTTGTTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGAC 17055859 Query 66541 GAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGT 66599 |||||||| || ||| ||||||||| | || | | ||| ||| | | || | Sbjct 17055860 AAGCCCGTTGGAACAGCCGTTGGTGCCGGCAAT-GTAGCTCCCCGTGGATCTGATGCAGC 17055918 Query 66600 GAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCC 66659 || || ||||| || ||||| | || |||||| || |||| || ||| Sbjct 17055919 TGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGT 17055978 Query 66660 GGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA 66705 | | || || |||||| |||| |||| |||| || ||| |||| Sbjct 17055979 CGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCA 17056024 >seq16 Length=36154882 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| ||| |||| || || ||||||||||| ||||||| Sbjct 10882662 TGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAAGCCCGGTGTTTCTACGGTTTCCAGA 10882721 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| |||||||||| || Sbjct 10882722 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 10882781 Query 61376 A 61376 | Sbjct 10882782 A 10882782 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||| ||||| ||| |||| || || ||||||||||| ||||||| Sbjct 10897816 TGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAAGCCCGGTGTTTCTACGGTTTCCAGA 10897757 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| |||||||||| || Sbjct 10897756 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACGTACATCAAGG 10897697 Query 61376 A 61376 | Sbjct 10897696 A 10897696 >seq11 Length=32426571 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | |||||||||| ||| || ||| Sbjct 23758259 GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGA 23758200 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 |||||||| | ||||| || |||||||| | ||| || || || || || || || Sbjct 23758199 TTACTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGC 23758140 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||| | ||| || | ||||||||| Sbjct 23758139 GACTCAATGATGGCATACCACAGCTGCTGAGCCTTCACC 23758101 >seq21 Length=37011614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | || || || | |||||| |||| ||||| ||| |||| | Sbjct 18721260 CAGGAGGTGCAGGTCCCTGAAGCACGATCCTTCTACAGCTTTCAGATCCTCATAGAGACT 18721319 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 |||||||| |||||||||||| | |||||| | || ||||||||||| Sbjct 18721320 GTCCACTCAGAGATGTACAGTATGCTCATCAACACTTACATCAGGGA 18721366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555561960880