Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryzias_20latipes_20[refseq_20GCF_5F000313675.1_202007-05-09] 7,189 sequences; 869,818,208 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7169 172 8e-41 seq5063 172 8e-41 seq9 172 8e-41 seq18 84.2 3e-14 >seq7169 Length=826096 Score = 172 bits (190), Expect = 8e-41 Identities = 184/235 (78%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 540932 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 540875 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || ||||||| | | ||||| ||||||| |||| | || Sbjct 540874 CTCGTTGATGGGAAATAATTGCAGTCCCCAATCCCTATCACGAGTGGGGTTCAGCGGGTT 540815 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| ||||| ||| | | || || ||| | || ||||||| |||||||||| Sbjct 540814 ACCCACGCCTCTCGGCGCAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGCGCGTGC 540756 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 540755 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 540702 >seq5063 Length=4665 Score = 172 bits (190), Expect = 8e-41 Identities = 184/235 (78%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 1830 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 1773 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || ||||||| | | ||||| ||||||| |||| | || Sbjct 1772 CTCGTTGATGGGAAATAATTGCAGTCCCCAATCCCTATCACGAGTGGGGTTCAGCGGGTT 1713 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| ||||| ||| | | || || ||| | || ||||||| |||||||||| Sbjct 1712 ACCCACGCCTCTCGGCGCAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGCGCGTGC 1654 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1653 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 1600 >seq9 Length=33261919 Score = 172 bits (190), Expect = 8e-41 Identities = 184/235 (78%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 15806855 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 15806798 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || ||||||| | | ||||| ||||||| |||| | || Sbjct 15806797 CTCGTTGATGGGAAATAATTGCAGTCCCCAATCCCTATCACGAGTGGGGTTCAGCGGGTT 15806738 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| ||||| ||| | | || || ||| | || ||||||| |||||||||| Sbjct 15806737 ACCCACGCCTCTCGGCGCAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGCGCGTGC 15806679 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 15806678 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 15806625 >seq18 Length=31847347 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||| ||| |||| | |||| | |||||||||||||||||||||||||||||| ||| Sbjct 27129322 TCAGTGTGGCGTGCGTCCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 27129264 Query 221 AAACTTCCGTGGC 233 || ||| ||||| Sbjct 27129263 AATCTTGTGTGGC 27129251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751947628135